Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03939 ATGAGTTGCAACGGTTGTCGTGTCCTCCGAAAAGGATGCAGCGAAGATTGCATGTTACGTGATTGTCTAACATGGATACAAAACCCACAAGCACAGGGTAACGCCACTCTCTTCGTTGCTAAATTCTTCGGCCGTGCTACACTCATGTCTTTCCTATCTTCTGTTCCTCCCAACCAAAGATCCGGTTTGTTCCAGTCACTTATGTATGAAGCTGTTGGAAGGACTATAAATCCGGTGAATGGAGCAGTGGGGCTTTTGTGGACTGGGAGGTGGCGGTTTTGTCAACTGGGTGTCGAGCAAGTTTTGAGGGGTAACGGTGGCGCGTTGACACCACTGCCGGATCATGAGAGTAGTGAAAAGGGAAGTAGTTCTAGACATCATCAATATCACCAACAAAAACTAATGATTGAAGAAAACAAGACACAGTCCGAGGAATCGGAGTCGTCGACGTTAGGAAGCAGAACAGGAACTGAGGATTATTCATATGATTATGCTAATTCTCAAACTCAAACTCAAACCAAACAACTCCTTACACTGTTCTTATGA 546 0.4505 MSCNGCRVLRKGCSEDCMLRDCLTWIQNPQAQGNATLFVAKFFGRATLMSFLSSVPPNQRSGLFQSLMYEAVGRTINPVNGAVGLLWTGRWRFCQLGVEQVLRGNGGALTPLPDHESSEKGSSSRHHQYHQQKLMIEENKTQSEESESSTLGSRTGTEDYSYDYANSQTQTQTKQLLTLFL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03939 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 167 - -
Vivi1g03939 181 MobiDBLite consensus disorder prediction 106 166 - -
Vivi1g03939 181 MobiDBLite consensus disorder prediction 118 144 - -
Vivi1g03939 181 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vivi1g03939 181 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Vivi1g03939 181 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03939 Vivi-Chr1 83081604 83082457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03939 1 114 AS2 family AT3G49940 71.053 5.92e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1g03939 LOB 7.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03939 1 83081604 83082457 Vivi1g03939 1 83081604 83082457 ECH
Vivi2g03448 2 140914608 140915887 Vivi1g03939 1 83081604 83082457 PCT