Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03920 ATGGGTGATGCAGTCAATGAAGAGGATTGTAGAGGTAGTGCACTTGTTGCTTCTCCTAGGAGGGATATAGGTTTCTTTGAAGGGGACAAAGATTTTGAGCCACCCAATGGGATTGAGTTTGAATCTCATGAAGCAGCGTATGCGTTTTATCAAGAATATGCGAAATCGATGGGGTTCACCACCTCGATTAAGAATAGTAGGCGCTCGAAGAAGACGAAAGAGTTTATTGATGCAAAATTTGCGTGCTCGAGATATGGAGTAACGCCGGAGTCTGATGGTGGTAGTAGTCGAAGGCCGAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCATGTGAAGAAAAAACAAGATGGGAAGTGGATCATTCATGAATTTATAAAGGATCATAATCATGAACTTTTACCGGCTTTGGCGTATCATTTTCGAATTCATAGGAATGTGAAGCTAGCTGATAAGAATAATATGGATATCTTGCATGCTGTTAGTGAACGCACGAGAAAGATGTTTGTTGAAATGTCTAGACAATCTGGTGGTTGTCAAAGCATTGGGTCTCTCGCGAGTGATATGAATTATCAGTTTGACAGAGGGCAGTATCTGGCTTTGGACGACGGAGATGCTCAAGTTATGCTGGAGTATTTCAAGCACGTTCAAAAGAAGAGCCCCGACTTCTTCTATTCTATAGATTTAAATGAAGAACAGCGTTTAAGAAATCTATTTTGGGTTGACTCAAAAAGTATTAATGATTATTGCAGCTTTAATGACGCGGTTTCATTTGATACTACCTACATAAAGAGCAATGATAAATTGCCTTTTGCTCCTTTTGTTGGAGTGAATCATCACTCTCAACCTATGTTGCTTGGATGTGCATTGGTTGCAAACGAGACTAAGCCAACTTTTGTTTGGTTACTGAAGACATGGCTTAGAGCGATGGGAGGACAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAATGCACGACATTGTTTTTCTCTTTACCACATATTGGAAAAGATACCTGAAAATCTGTCTTTTGTGATAAAGCAGTATAAGAACTTCTTGCCAAAGTTTAACAATTGCATTTTTAAGTCTTGGACAGACGAAGAGTTTGACATGAGATGGTGGGAAATGGTGACTATATTTGAACTCCAGGATGATCTATGGTTTCATTCATTGTATGAAGACCGGAAAAAGTGGGTACCAACGTTCATGGGGGATGTCTTTTTAGCTGGATTGTCCACACCTCAACGTTCTGAGAGTATGAATTCTTTCTTTGACAAATACATTCATAAGAAGATCACCCTTAAAGAATTTGTGAAACTATATGGGTTAATTCTTCAAAATAGGTATGATGAGGAATCCGTTGCGGATTTCGATACATTGCACAAACAGCCTGCAATTAAATCTCCTTCACCATGGGAAAAACAAATGTCAACAATTTACACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGTTGTTCATCTAGGATAGAGGCTGGAGATGAAACTGTTGCGAAATTTATAGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTAACTTGGAATGAGTTGAGCTTAGAGGTCTCTTGCTTCTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGACATGCATTGAGTGTTCTCCAACGTTGCGGTTGTTCGAGTGTTCCCGCTCAATTTATCATAAAGAGGTGGACCAAAGATGCCAAAATTAGGGAGCCAATAGCATATAGTACAAGAAGGATACAAACTAGGGTTCAACGTTATAATGATTTGTGCAAACGAGCTATTGAGTTGAGTGAAGAAGGATCGTTATCTGAAGAGAGTTACAATGCTGCTCTCCGTACACTTGTTGATAGCCTGAAGAACTGTGTACTTGTAAATAACGCTAACGACAATGGTGCAGAAACTGGGAACAGTGGTTGTACTCTTCGTGAAGCAGAAGAAAATCAGGGTACCCTTGCTTTGAGATCAAGTAAGAAGAGGAACACAACTCGGAAAAGAAAGGTGCAACAAGAGCAGAATCCTGTACTTGTGGATGCTCAAGATAGCCTGCAGCAAATGGATAATCTTACCTCGGATGCAATGACCCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCAGGTACAATTGAACTTAATGGAACCGCCTCATGATGGTTACTATGTTAATCCACACAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCTAGCCATGATGGGTTTTTCGGAACACAGCAAAGCATTCACGGGATGGGAGGAGGGCAATTGGAATTTCGTACGACAACCAATTTTGGATATAGCCTTCAGGATGAGCCTGATCCACACTTTCACAGCAATAATACAAGAAATACATAG 2433 0.4024 MGDAVNEEDCRGSALVASPRRDIGFFEGDKDFEPPNGIEFESHEAAYAFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGGSSRRPSVKKTDCKACMHVKKKQDGKWIIHEFIKDHNHELLPALAYHFRIHRNVKLADKNNMDILHAVSERTRKMFVEMSRQSGGCQSIGSLASDMNYQFDRGQYLALDDGDAQVMLEYFKHVQKKSPDFFYSIDLNEEQRLRNLFWVDSKSINDYCSFNDAVSFDTTYIKSNDKLPFAPFVGVNHHSQPMLLGCALVANETKPTFVWLLKTWLRAMGGQAPKVIVTDQDKALKEAIEEVFPNARHCFSLYHILEKIPENLSFVIKQYKNFLPKFNNCIFKSWTDEEFDMRWWEMVTIFELQDDLWFHSLYEDRKKWVPTFMGDVFLAGLSTPQRSESMNSFFDKYIHKKITLKEFVKLYGLILQNRYDEESVADFDTLHKQPAIKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCSSRIEAGDETVAKFIVQDYEKDEEFLVTWNELSLEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPAQFIIKRWTKDAKIREPIAYSTRRIQTRVQRYNDLCKRAIELSEEGSLSEESYNAALRTLVDSLKNCVLVNNANDNGAETGNSGCTLREAEENQGTLALRSSKKRNTTRKRKVQQEQNPVLVDAQDSLQQMDNLTSDAMTLNGYYGTQQNVQGLQVQLNLMEPPHDGYYVNPHSMQGLGPLNSMAPSHDGFFGTQQSIHGMGGGQLEFRTTTNFGYSLQDEPDPHFHSNNTRNT 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03920 810 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 643 IPR031052 GO:0006355
Vivi1g03920 810 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Vivi1g03920 810 Pfam MULE transposase domain 256 348 IPR018289 -
Vivi1g03920 810 SMART 26again6 546 573 IPR006564 GO:0008270
Vivi1g03920 810 Pfam SWIM zinc finger 542 570 IPR007527 GO:0008270
Vivi1g03920 810 Pfam FAR1 DNA-binding domain 49 135 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03920 Vivi-Chr1 82772191 82776583 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g03920 MULE 1.2e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03920 - - mtr:112416729 1439.86