Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03913 ATGACGAGCGCTTCAGAACTATTCCACAATCGAAGACACCGATTAGGCCGAAATGATCTCGATCCATCTTTCCACTCCTCACCTTCTCCAGACTTCCATAACCACCGCTTCCACGACTCCGACGATGATGATTCTCTCCGTATCCGCCGCCACTACAACGTCCGCCGCGTCCGTCACCCGGAGCGTGTATCTGATAGATTTGATGCGAGGTATCGTCGGTCTCTGTTTCATGATAACTTTGATTCTGGAGAAAGTGTGAGAGGTATTCCAAGTTCGAGTGGTGGTAACAGATTACCTGTAGGTGTGAGACTTGCGCGAGAAAGACTCCTTCAGAGGTTGAGAGGAGAGCCTGTTGATAGAAACAGGGTTGGTTTCCTCAGGCAAAATAATAGAGATCTAATTGATGAGGAGGATCAAGAAAGTGAGTTATCAAGTGAAGTTGCAACTGTGGACTCTTTAGTTACTGACTTGACTTCTCAAATGGCAAGGTTCCAGCTCTTGCATCAAACATCTACAAAGCCACCGGGTCTCACTCAGGAGGCCCTTGACTGTTTGCGTCTTGAAGTTTTTAGCAGCAGCAATATGGAATCAGAATCCAGGATACCGCAAGATTGTGGGATATGCTTGGAATCTTACACTGATGGAGATAAACTAATCCATTTGCAATGTGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCAGTTGTGGAGACTGCCCCTACTGTCGCAGATGTATAGTTGTAAGTAGTCGATTTCCGAAGAATGAAGCTGTGTAG 786 0.4606 MTSASELFHNRRHRLGRNDLDPSFHSSPSPDFHNHRFHDSDDDDSLRIRRHYNVRRVRHPERVSDRFDARYRRSLFHDNFDSGESVRGIPSSSGGNRLPVGVRLARERLLQRLRGEPVDRNRVGFLRQNNRDLIDEEDQESELSSEVATVDSLVTDLTSQMARFQLLHQTSTKPPGLTQEALDCLRLEVFSSSNMESESRIPQDCGICLESYTDGDKLIHLQCGHKFHSACLDPWIRSCGDCPYCRRCIVVSSRFPKNEAV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03913 261 ProSiteProfiles Zinc finger RING-type profile. 205 246 IPR001841 -
Vivi1g03913 261 PANTHER SI:CH211-59O9.10 49 252 - -
Vivi1g03913 261 SMART ring_2 205 245 IPR001841 -
Vivi1g03913 261 CDD RING-H2_PA-TM-RING 204 246 - -
Vivi1g03913 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 250 IPR013083 -
Vivi1g03913 261 MobiDBLite consensus disorder prediction 1 43 - -
Vivi1g03913 261 Pfam Ring finger domain 204 246 IPR001841 -
Vivi1g03913 261 SUPERFAMILY RING/U-box 204 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03913 Vivi-Chr1 82667539 82670556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03913 1 250 C3H Transcription Factor Family AT1G49850 39.326 4.80e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03913 - - gmx:100814695 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03913 1 82667539 82670556 Vivi1g03913 1 82667539 82670556 ECH