Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03899 ATGGGAACTCAACAATGTGATTTGTCTGAAAAAACAGCAAAGATCGGCGCTGAATGTTTAGACAACGAACAGAGAGTACTTGGTAATGAGGTAACTGATTCTGTTATTGATGAAAAAACAGCTCATGTTGGTTCTGAGGGTTTAGACGACGAACGCAGAGTACTTGGTACTGTGGCAACCAATTCTGTAACTGATGAAGAAACAGCTAAGATCGGCTCTGAATGTTTAAACAACGAACAGAGAGTGCTTGGTACTGTGGCAACCAATTCTGTTATTGATGAAAAATCAAATCAAGTTTTGGGGAATGTGACTGAGAACTCTGTTAGTCAACTGCCTGTACCCTCTGAACAAGTCCCTGTTTGCTTATCTGATGATAAATTGGAAAACAAATGTCTTCAAGATGTTCAAAATAAACATGGGGAAACGAGTGATGCAGTTGCTTCCGTTGTTGTTGAAGAACCAACACAATCCGTTCTTGCACAAGTGAACTCGGATTCTGCGAATAAGCCATCTGATCCACCTTCTGGAGATGGCGTGAAAGATACTAGCCTTCCAAATGAGCCTAGTGAAATGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACACAACCTGTTCCTGCTCAAGTGAACTCGGAATCTGCGAATAAGCCGTCAGATTCACCTTCTGGAGATGGTGTGGAAGATATTAGTCTTCCAAATGAGCATGGTGAAATGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACACAACCCGTTCCTGCTCAAGTCAACTCGGATTCTGCGAATGAGCCATCAGATCCACCTTCTGGAGATGGTGTGAAAGATATTAGTCTTCCAAATGAGCCCGGTAAAATGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACACAACCCATTCCTGCTCAAGTGAACACACATTCTGTGAATAAGCCATCGGATCCACCTTCTGGAGATGGTGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAATGAGTGATACAGTAACTTCCCTTGTTATTGAAGAACTAACACAACCCGTTCCTGCTCAAGTGAACACACATTCTGCGAATAAGCCATCGGATCCACCTTCTGGAGATGGCGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAACAAGCAACGCAGTAGCCGGCCTTGTTGAAGACCACACACAATCCATTCCTGCTCAAGTGAATACAGATTCTTTGAACGAGCTACGGGATCCACCTTCTGGAGATGGTGCTAAAAATGTTAGCTCTGATTGTTCAGAAAGAAAGTCTAAAAGCTTAGCTCGTTCAAGTTCGAGACAAGGGGGTAAAAGTAACTCAAAATTACCGAAGAAGTATATATTGAGGTCGTTGGGAAGCAGTGACAGGGCTCTGCGGCCAAGAGATAATAAACCTAAAGCTCCTGAACCAATTAATAATGTTGCTGATGTTAACAGTGATGAAACAAAGACAAAAAAAGAGAAGAAGAAAAAGAAAAAGCCAAGAAAAGAGGGAATTAATGATCAATTTTCTAGAATCAGAGCTCAATTGAGATACTATTTAAACCGAATGGGATACGAACAGAACTTGATCGATGCTTATTCTGGTGAGGGCTGGAAAGGAGGCAGTTTGGAAAAATTAAAGCCCGAGAAGGAGATTCAACGGGCTAAGTCTGAAATTCTTCGACGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCTGAAGGAAAGCTTCCTGAATCATTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTCTGTGCAAAATGCCAGACCAAAGTGTTGGGCACTAATAATGATATAATTCTTTGTGATGGTGCTTGTGACCGTGGATATCACCAGCTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGCGACGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATCGATATTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACTGACACTTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATAATAACTTGGGACTTCCTTCAGACGATTCTGATGATGATGATTATAATCCTAATGGTCCAGAGGATGTGGAGGTTAAAGGAGGTGAATCTAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAATTTGGAGGAGACGCATCACGAGGATCAATACATGGGTCTTCCTTCTGAAGATTCAGAAGATGATGATTATGATCCTGATGCTCCAAATCTCGATGTTAAAGCCACTGAGGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCTGTTGAACAAGATGGCGGCGTCACATCTGCATCCTTGGATAGTGTTAAGAACAAAGGTTCTAATAAACAAAATCGCAAGAAGCCATCTATAGCTGAAGAACTGTCATCTTTGGTAGAGCCAGATCTCGGTGAAGAAGATTTCACTCCGGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTACCAAAAGCTGTATGAAGAGGCATACCATAGTGCCACTAGTGAGGATGAAGATTGGGCTGCTACCGCTACTCGAAGTAGAAAAAAAAAACTAACTGGCCAAATTACTCCAGTGTCACCAAATGGAAGTGCCTCAAATAATTCCAAACGTTCTGCTAAGAGGAACACCCATCGGCATAAAGTTGATAACACAAATAATTCTCCCACCAAAACACTTGAAGGATGCACGGAATCTGGTTCCAGGGGTAAAAAGCGCGGATCTCCGCACAAAAAACTTGGAGAAGCTGCTGTTCAGAGGCTTTACAAATCTTTCAAAGAAAATCAATATCCAGAACGAGCCACAAAAGAAAGCTTGGCGCAAGAAATTGGACTCACATTTCATCAAGTTGACAAATGGTTTGGAAATTCTCGATGGAGCTTCCGACATTCAACACATATGAAAGCAAGTCCAGGTAGTAATGCTTCGCATCAGGCCACTGACAGCAAAGCTAAAAAGAAAGGAGAGATGGGTAATGCTTCGCAGCAGGTCACTGACAATGGAGCAGAAAATAAAGGAGAGAAGGAACGTGGATTAGTTTCCCAGGAGACTATTGGAGAAAAATCAAGAACCCCGAGATCTAAGAAAAGGAAGCAGCAGGACACTGACAGTGGAGCTGAAAAGAAAGGAGAGATGGGTAATGCTTCACAGCAGGTCACTGACAATGGAGCCGAAAATAAAGGAGAAAAGGAACGTGAATTAGTTTCCCAGGAGACTATTGGAGAAAAATCAAGAATCCTGCGTTCTAAGAAAAGGAAGCAGCAGGCCACTGACAGCGGAGCTGAAAAGAAAGGAAAGATGGGTAATGCTTCACAGCAGGTTACTGACAATGGAGCAGAAAATAAAGAAGAGAAGGAACCTGTATTAGTTTTACAGAAGACTATTGGAGATAAATCAAGAACCCCAGCGTCTAGGAAAAGGAAGCAATTGTCTGAGCCGCACGCATCTGAAGCAGTGTTGGCCCCTAACGACCCAACCCCACCGAAAGTTGAAACAGGCAAGAAAACGAAGAAAAAGAAAGGGAAATGA 3639 0.4224 MGTQQCDLSEKTAKIGAECLDNEQRVLGNEVTDSVIDEKTAHVGSEGLDDERRVLGTVATNSVTDEETAKIGSECLNNEQRVLGTVATNSVIDEKSNQVLGNVTENSVSQLPVPSEQVPVCLSDDKLENKCLQDVQNKHGETSDAVASVVVEEPTQSVLAQVNSDSANKPSDPPSGDGVKDTSLPNEPSEMSDAVTSLVVEEQTQPVPAQVNSESANKPSDSPSGDGVEDISLPNEHGEMSDAVTSLVVEEQTQPVPAQVNSDSANEPSDPPSGDGVKDISLPNEPGKMSDAVTSLVVEEQTQPIPAQVNTHSVNKPSDPPSGDGVKDISLPNEPGEMSDTVTSLVIEELTQPVPAQVNTHSANKPSDPPSGDGVKDISLPNEPGETSNAVAGLVEDHTQSIPAQVNTDSLNELRDPPSGDGAKNVSSDCSERKSKSLARSSSRQGGKSNSKLPKKYILRSLGSSDRALRPRDNKPKAPEPINNVADVNSDETKTKKEKKKKKKPRKEGINDQFSRIRAQLRYYLNRMGYEQNLIDAYSGEGWKGGSLEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIDIVNDLLGTSLSLTDTWERVFPEAATAAGSILDNNLGLPSDDSDDDDYNPNGPEDVEVKGGESSSDESEYASASENLEETHHEDQYMGLPSEDSEDDDYDPDAPNLDVKATEESSSSDFTSDSEDLAATIKDNMSVEQDGGVTSASLDSVKNKGSNKQNRKKPSIAEELSSLVEPDLGEEDFTPVSGKRNVERLDYQKLYEEAYHSATSEDEDWAATATRSRKKKLTGQITPVSPNGSASNNSKRSAKRNTHRHKVDNTNNSPTKTLEGCTESGSRGKKRGSPHKKLGEAAVQRLYKSFKENQYPERATKESLAQEIGLTFHQVDKWFGNSRWSFRHSTHMKASPGSNASHQATDSKAKKKGEMGNASQQVTDNGAENKGEKERGLVSQETIGEKSRTPRSKKRKQQDTDSGAEKKGEMGNASQQVTDNGAENKGEKERELVSQETIGEKSRILRSKKRKQQATDSGAEKKGKMGNASQQVTDNGAENKEEKEPVLVLQKTIGDKSRTPASRKRKQLSEPHASEAVLAPNDPTPPKVETGKKTKKKKGK 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 885 908 - -
Vivi1g03899 1212 FunFam Homeobox protein HAT3.1 585 664 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 400 414 - -
Vivi1g03899 1212 CDD homeodomain 952 1001 IPR001356 GO:0003677
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 844 883 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 935 953 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 737 752 - -
Vivi1g03899 1212 ProSiteProfiles Zinc finger PHD-type profile. 602 659 IPR019787 -
Vivi1g03899 1212 Pfam PHD-finger 604 659 IPR019787 -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 246 269 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 1094 1130 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 1001 1016 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 1039 1078 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 772 791 - -
Vivi1g03899 1212 ProSitePatterns Zinc finger PHD-type signature. 605 656 IPR019786 -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 185 222 - -
Vivi1g03899 1212 Pfam Homeodomain 953 997 IPR001356 GO:0003677
Vivi1g03899 1212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 666 IPR013083 -
Vivi1g03899 1212 Gene3D - 944 1013 - -
Vivi1g03899 1212 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 422 1167 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 695 953 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 336 367 - -
Vivi1g03899 1212 CDD PHD_PRHA_like 604 656 IPR045876 -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 161 512 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 1001 1212 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 799 816 - -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 295 318 - -
Vivi1g03899 1212 SUPERFAMILY FYVE/PHD zinc finger 594 662 IPR011011 -
Vivi1g03899 1212 SUPERFAMILY Homeodomain-like 939 1002 IPR009057 -
Vivi1g03899 1212 SMART HOX_1 939 1005 IPR001356 GO:0003677
Vivi1g03899 1212 SMART PHD_3 604 657 IPR001965 -
Vivi1g03899 1212 MobiDBLite consensus disorder prediction 1169 1183 - -
Vivi1g03899 1212 ProSiteProfiles 'Homeobox' domain profile. 941 1001 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03899 Vivi-Chr1 82468871 82477152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03899 488 998 Homeobox Transcription Factor Family AT3G19510 46.939 1.96e-128 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vivi1g03899 PHD 5.8e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03899 - - psat:127097838 1837.77