Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03890 ATGGAGACCCCAAAAGATGAACTTCAAGTAGTGGACCATTTGACCACACCACCAACAACAACTGGGACCAGTTTCTCTCAGTTACTATTAGCAGATGACGATGTTCTTGTGGCTGATAATCAAAACCCATTGGTGGTGGGTCTTGATCATCATGTGGACCAAACCTTTTCAACTTCTTCTCTTTTCTCTCTTCACAACACACCCAAAATGCTTTGTTTTGGTGGTAACTACCAAAATGAAATTGAAATTACTCCTCAGAAATCTGTCATCACTTCTAGTGATTCTTCTTCTGCTTCAGCTTCTTCATGCAACCACATCAACAACACTGCTTTCAATAATGCCAATAATAGTTTGCAGAAAAAGCGGAATGGGTCAGGAGGACAAGAACTAGGGACCAGGGCAGGTGTTGGAGGGCAGAAAGGTCCTAAGAAGACCAAAGCAGACAACCCCACTTCAACTGGACATGCAAAGAAAAAAGAGAAACTTGGCGAACGAATTGCAGCATTACAACAACTTGTTTCTCCCTTTGGCAAGACTGATACTGCTTCCGTGCTTCACGAGGCAACTGGTTACATAAGATTCTTACATGATCAAGTTCAGGTTCTGTGCTCTCCATACCTCCAACCTTCACAAATTCAATTTCAAAATGGGGACGGAGATAACAATGAAAGAGGAGAAGAAAACACACAAGTGAACAAAGATTTATCTAGCAGAGGTTTATGTTTGATCCCTGTTGGATGCACCTTACACGTGGCAGGTAGTAACGGTGCTGATTTTTGGTCACCAGCAACAATAGACAACAACAATGTTGTTTCACCTTCCACTACTATTGCTAAACAGTAG 843 0.4199 METPKDELQVVDHLTTPPTTTGTSFSQLLLADDDVLVADNQNPLVVGLDHHVDQTFSTSSLFSLHNTPKMLCFGGNYQNEIEITPQKSVITSSDSSSASASSCNHINNTAFNNANNSLQKKRNGSGGQELGTRAGVGGQKGPKKTKADNPTSTGHAKKKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIRFLHDQVQVLCSPYLQPSQIQFQNGDGDNNERGEENTQVNKDLSSRGLCLIPVGCTLHVAGSNGADFWSPATIDNNNVVSPSTTIAKQ 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03890 280 Gene3D - 156 213 IPR036638 GO:0046983
Vivi1g03890 280 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 251 - -
Vivi1g03890 280 MobiDBLite consensus disorder prediction 111 126 - -
Vivi1g03890 280 CDD bHLH_AtbHLH_like 157 202 IPR045239 -
Vivi1g03890 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Vivi1g03890 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 212 IPR036638 GO:0046983
Vivi1g03890 280 MobiDBLite consensus disorder prediction 111 161 - -
Vivi1g03890 280 MobiDBLite consensus disorder prediction 213 232 - -
Vivi1g03890 280 FunFam Transcription factor bHLH113 139 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03890 Vivi-Chr1 82352429 82354555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03890 133 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 48.485 1.97e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03890 - - gmx:100809317 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03890 1 82352429 82354555 Vivi1g03890 1 82352429 82354555 ECH