Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03889 ATGGAGACCCCAAAAGATGAACTTCAAGTAGTGGACCATTTGACCACACCACCAACAACAACTGGGACCAGTTTCTCTCAGTTACTATTAGCAGATGACGATGTTCTTGTGGCTGATAATCAAAACCCATTGGTGGTGGGTCTTGATCATCATGTGGACCAAACCTTTTCAACTTCTTCTCTTTTCTCTCTTCACAACACACCCAAAATGCTTTGTTTTGGTGGTAACTACCAAAATGAAATTGAAATTACTCCTCAGAAATCTGTCATCACTTCTAGTGATTCTTCTTCTGCTTCAGCTTCTTCATGCAACCACATCAACAACACTGCTTTCAATAATGCCAATAATAAAAAGCGGAATGGGTCAGGAGGACAAGAACTAGGGACCAGGGCAGGTGTTGGAGGGCAGAAAGGTCCTAAGAAGACCAAAGCAGACAACCCCACTTCAACTGGACATGCAAAGAAAAAAGAGAAACTTGGCGAACGAATTGCAGCATTACAACAACTTGTTTCTCCCTTTGGCAAGACTGATACTGCTTCCGTGCTTCACGAGGCAACTGGTTACATAAGATTCTTACATGATCAAGTTCAGGTTCTGTGCTCTCCATACCTCCAACCTTCACAAATTCAATTTCAAAATGGGGACGGAGATAACAATGAAAGAGGAGAAGAAAACACACAAGTGAACAAAGATTTATCTAGCAGAGGTTTATGTTTGATCCCTGTTGGATGCACCTTACACGTGGCAGGTAGTAACGGTGCTGATTTTTGGTCACCAGCAACAATAGACAACAACAATGTTGTTTCACCTTCCACTACTATTGCTAAACAGTAG 834 0.4197 METPKDELQVVDHLTTPPTTTGTSFSQLLLADDDVLVADNQNPLVVGLDHHVDQTFSTSSLFSLHNTPKMLCFGGNYQNEIEITPQKSVITSSDSSSASASSCNHINNTAFNNANNKKRNGSGGQELGTRAGVGGQKGPKKTKADNPTSTGHAKKKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIRFLHDQVQVLCSPYLQPSQIQFQNGDGDNNERGEENTQVNKDLSSRGLCLIPVGCTLHVAGSNGADFWSPATIDNNNVVSPSTTIAKQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03889 277 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 248 - -
Vivi1g03889 277 MobiDBLite consensus disorder prediction 210 229 - -
Vivi1g03889 277 MobiDBLite consensus disorder prediction 110 158 - -
Vivi1g03889 277 Gene3D - 153 210 IPR036638 GO:0046983
Vivi1g03889 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Vivi1g03889 277 FunFam Transcription factor bHLH113 136 206 - -
Vivi1g03889 277 CDD bHLH_AtbHLH_like 154 199 IPR045239 -
Vivi1g03889 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 209 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03889 Vivi-Chr1 82352429 82354556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03889 130 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 48.485 1.61e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03889 - - gmx:100809317 274.248