Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03857 ATGGCTGTGAAAGAGGAATGCTGGACCCGAGTCGTTGAAAATCCTGTTAAGCTGAGAAACAATGTGTTGGGTATTCCAAGAGATGTGATTCGTGCATGTATATCCGGGAAGATTCCAAGAATTGTCTTGATTGATCGCAACACTGGCGTTCCGTACTACTGCGAGATGGTAAAGAGGGCAGGTACTATAGATAGGTATATATTCGGTGGATGGTCTGACTTTTGTAAAGAGCGCAACCTACAGAAGGGAGACACATTGCGGTTCTCCATTAAATATCCTCCGGTGGACTCGATATTGGTGACCGTAGAGCGTGAGTCATGA 321 0.4548 MAVKEECWTRVVENPVKLRNNVLGIPRDVIRACISGKIPRIVLIDRNTGVPYYCEMVKRAGTIDRYIFGGWSDFCKERNLQKGDTLRFSIKYPPVDSILVTVERES 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03857 106 CDD B3_DNA 23 88 IPR003340 GO:0003677
Vivi1g03857 106 SUPERFAMILY DNA-binding pseudobarrel domain 19 90 IPR015300 -
Vivi1g03857 106 Gene3D - 3 104 IPR015300 -
Vivi1g03857 106 Pfam B3 DNA binding domain 16 89 IPR003340 GO:0003677
Vivi1g03857 106 SMART B3_2 15 106 IPR003340 GO:0003677
Vivi1g03857 106 ProSiteProfiles B3 DNA-binding domain profile. 8 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03857 Vivi-Chr1 81894351 81894785 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1g03857 B3 4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03857 - K11265 vvo:131647496 221.476