Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03850 ATGGTGAGACCATTGGCGAAAATCTGTGACATCAACGATAGCAACGAGATTTGGAAAGTTTCTGTTCGAGTTCACCATAAATGGAAGGTTGTTTCTAACAAGAAGGAGCATTTTGAGATGATTTTTGTTGACGTATCGGGTGGTGACATACATGTTGTTGTTCCTGCACCACATGTATCTCTATTTTATGAAAAAATGGCATTGGATCATAGTTACACGGTTTCCAATTTTAAGGTTCAGCCTAATGTCGCGGCTTTCAGACCTTCGTCACATAAGTTTTTGTTGAAGTTTACTGCAGACACAACGGTTACGGATGATAACAAGAATGAAATACCGCCAAAGCCGCTGATGTTTACTAAATTTACTGATATAATAACCGGTAACTTTAACAAGGATGTGCTAATAGACGTCATTGGTATGGTGGAAAGTATTGGGTATTCTCAGACCACATCAGGTGCCAGGAAGCAGCAGATTAACATGATGTTGCGGGACGGCGGTGACAATACTATCAACTGTACACTTTGGGAATCCTATGCTGAACAATTCCTCAAGTTCAAACAGGAACGTGGGGATGATTCTGGTCCTATGTTTGTCATGCTCCAATATGCAAAAGTCAAGGAACATGGAAAGTTTCCACTGTCCGTGTCAAACACGTTTAATGTCACTCTGCTTGGTCTGAATACTGATTTGCTGCCGATGAAAGAATTTATGGAAAGCATTCCGAAGGAGTCCATGATTACTTTGTCTGGGCAGGAGGGTTCGAATTCGCAGCTTTCAGCGCAAAACTCTAAAAATCAACAGTTGACTCCTGTTCAGAAATTGCTTTCAAAGGTCGTTGTTATGCCTATTGGGGATATCATAAAGCTTAGGACTATTACATTTTGTGCGACTGTTGGAGAAACTAAAATGCTGGTGGCCTCTCCCTATGACTGGTATTATCGTGGTTGCCATGCTTGCTCCTATATTGCGCGTGGTGACAAACCTCCGTTTGAGTGTGAGGCAGGCCATTTCACTGAGGCAGAGATTTTTAGGTATAAGATTGAGATCGAAGTTACTCATGTAGGGAATAGCTGTAACTTTCTATTTTGGGACAGAAAATGTGAGCTTCTTTTGGAATTGTCTGCTTCTCAGCTGCGTCATACAATGATCAAGGTTGGCATTCATGATCCATTGGAATTCCCACTGGCATTGGATCAGATGTTGGATCGTAAGATGGCTTTCAAAATCAAGTGGCAACCATGGTGGAAGAATGCCTCGGTAGTTATGCTATTCAAGAATGACCCTTTTGTGAAAGAGCTTAGTGATCATCTTGACACAGATGAAGAGGTTGTACCTATAAACTCCATACCGGCTGACCAACTTGAGATCAAGGAAGGCGTTGCTGAAGCAAAGGGCATTGCACTTTCAGAACCTGATTTTATTGTGGATCTTGATGTGACTTCGACGCACAGCCCAGATCCAATTACTCCTACTGGCAAAAGGCAGTTTCCAGGCGCATCAATATCCATGGACTCACACGTGGCGAGAATATGGAACTGGGGCGTGATTCTGATACCGATGGTCAGAGTGTAA 1572 0.4256 MVRPLAKICDINDSNEIWKVSVRVHHKWKVVSNKKEHFEMIFVDVSGGDIHVVVPAPHVSLFYEKMALDHSYTVSNFKVQPNVAAFRPSSHKFLLKFTADTTVTDDNKNEIPPKPLMFTKFTDIITGNFNKDVLIDVIGMVESIGYSQTTSGARKQQINMMLRDGGDNTINCTLWESYAEQFLKFKQERGDDSGPMFVMLQYAKVKEHGKFPLSVSNTFNVTLLGLNTDLLPMKEFMESIPKESMITLSGQEGSNSQLSAQNSKNQQLTPVQKLLSKVVVMPIGDIIKLRTITFCATVGETKMLVASPYDWYYRGCHACSYIARGDKPPFECEAGHFTEAEIFRYKIEIEVTHVGNSCNFLFWDRKCELLLELSASQLRHTMIKVGIHDPLEFPLALDQMLDRKMAFKIKWQPWWKNASVVMLFKNDPFVKELSDHLDTDEEVVPINSIPADQLEIKEGVAEAKGIALSEPDFIVDLDVTSTHSPDPITPTGKRQFPGASISMDSHVARIWNWGVILIPMVRV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03850 523 Gene3D - 253 425 IPR012340 -
Vivi1g03850 523 SUPERFAMILY Nucleic acid-binding proteins 4 104 IPR012340 -
Vivi1g03850 523 CDD RPA1_DBD_B_like 136 239 - -
Vivi1g03850 523 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi1g03850 523 SUPERFAMILY Nucleic acid-binding proteins 118 244 IPR012340 -
Vivi1g03850 523 CDD RPA1_DBD_A_like 19 103 - -
Vivi1g03850 523 Gene3D - 109 246 IPR012340 -
Vivi1g03850 523 Gene3D - 3 105 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03850 Vivi-Chr1 81640416 81644171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03850 8 328 Core DNA Replication Machinery Family AT5G45400 22.090 6.68e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03850 - - vvo:131618652 864.374