Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03819 ATGATCGAGGGAGATGAAACAACTCTTGCAGCAACAGCCAAGGAACAACCAGGTGAAGTGATGAACAGAGATAAGAACAGCGATGATGGAAGTGAACATGACGACAACCCCAAAGAGTGGTTAAACTTGAGCTTAGGAGGCAGTTCACTCCTGACAGCTGAAGACCCTGATTCACAATCAAGACCGGCCAAAGTTTTCTCGTGCAACTTTTGCATGAGAAAGTTTTTTAGTTCACAAGCATTAGGAGGTCATCAGAATGCTCACAAAAGGGAAAGAGGTGCAGCCAGAAGATATCAATCTCAGAGTCAGAGGACGATGGCACTAATGAGCATGTCCATGAATAATCCAATGTTTCGATCACTTGGTGTCCAGGCTCATTCACTAGTGCATAAGCCATGTAAAGGAGGAACTATGGTGGTTCCAAGCTTTCAAGAAACATATGCAGCAGGGCTCGGAATGGCATGTGCACCTTTCACGTCTGAATATCATGCAGACCAGGTGTGGCCAGGTAGCTTTCGTATGGTTTCACAACAGCCCCAGCCACCACAGGAATCACTCAAGCTTGATTTAGACCTCAGACTCTGA 585 0.4598 MIEGDETTLAATAKEQPGEVMNRDKNSDDGSEHDDNPKEWLNLSLGGSSLLTAEDPDSQSRPAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQSQRTMALMSMSMNNPMFRSLGVQAHSLVHKPCKGGTMVVPSFQETYAAGLGMACAPFTSEYHADQVWPGSFRMVSQQPQPPQESLKLDLDLRL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03819 194 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vivi1g03819 194 PANTHER ZINC FINGER PROTEIN 4-LIKE 11 194 - -
Vivi1g03819 194 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Vivi1g03819 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Vivi1g03819 194 MobiDBLite consensus disorder prediction 1 43 - -
Vivi1g03819 194 Gene3D Classic Zinc Finger 49 117 - -
Vivi1g03819 194 MobiDBLite consensus disorder prediction 175 194 - -
Vivi1g03819 194 MobiDBLite consensus disorder prediction 18 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03819 Vivi-Chr1 81303114 81305124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03819 64 182 C2H2 Transcription Factor Family AT1G24625 42.063 6.24e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03819 - - gmx:100306296 232.261