Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03816 ATGGGAACTCAACAATGTGATTTGTCTGAAAAAACAGCCAAGATCGGCGCTGAATGTTTAGACAGCGAACAAAGAGTACTTGGTAATGAGGTAACTGATTCTGTTATTGATGAAAAAACAGCTCATGTTGGTTCTGAGGGTTTAGACGACGAAAGCAGAGTACTTGGTACTGTGGCAACCAATTCTGTTACTGATGAAGAAACAGCTAAGATCGGCTCTGAATGTTTAAACAACGAACAGAGAGTACTTGGTACTGTGGCAACCAATTCTGTTATTGATGAAAAATCAAATCAAGTTTTGGGGAATGTGACTGAGAACTTTGTTAGTCAACTGCCTGTACCCTCTGAACATGTCCCTATTTGCTTATCAGATGATAAATCGGAAAACAAATGTCTTCCAAACGAGCATGGTGAAATGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACACAACCTGTTCCTGCTCAAGTGAACTCGGAATCTGCGAATAAGCCATCAGATCCACCTTCTGGAGATGGTGTGGAAGATATTAGTCTTCCAAACGAGCATGGTGAAATGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACGCAACCCGTTCCTGCTCAAGTCAAATCGGATTCTGCGAATAAGCCATCAGATCCACCTTCTGGAGATGATGTGAAAGATATTAGTCTTCCAAATGAGCCCGGTGAAATGAGTGATGCAGTAACTTCCCTCGTTGTTGAAGAACAAACACAACCCATTCCTGCTCAAGTGAACACACATTCTGCGAATAAGCCATCGGATCCACCTTCTGGAGATGGTGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAATGAGTGATACGGTAACTTCCCTTGTTATTGAAGAACAAACACAACCCGTTCCTGCTCAAGTGAACCTACATTCTGTGAATAAGCCATCGGATCCACCTTCTGTAGATGGCGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAATGAGTGATACAGTAACTTCCCTTGTTATTGAAGAACTAACACAACCCGTTCCTGCTCAAGTAAACACACGTTCTGCGAATAAGCCATCGGATCCACCTTCTGGAGATGGCGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAACAAGCAACGCAGTAGCCGGCCTTGTTGAAGACCACACACAGTCCATTCCTGCTCAAGTGAATACAGATTCTTTGAACAAGCTATGGGATCCACCTTCTGGAGATGTTGCTAAAAATGTTAGCTCTGATTGTTCAGAAAGAAAGTCTAAAAGCTTAGCTCTTTCAAGATCGAGACAAGGGGGTAAAAGTAACTCAAAATTACCGAAGAAGAAGTATATATTGAGGTCGTTGGGAAACAATGACAGGGCTCTGCGGCCAAGAGATAATAAACCTAAAGCTCCTGAACCAATTAATAATGTTGCTGATGTTAACAGTGATGAAACAAAGACAAAAAAAGAGAAGAAGAAAAAGAAAAAGCCAAGAAAAGAGGGAATTAATGATCAATTTTCTAGAATCAGAGCTCAATTGAGATACTATTTAAACCGAATGGGATACGAACAGAACTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGAGGCAGTTTGGAAAAATTAAAGCCCGAGAAGGAGATTCAACGGGCTAAGTCTGAAATTCTTCGACGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCTGAAGGAAAGCTTCCTGAATCATTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTCTGTGCAAAATGCCAGACCAAAGTGTTGGGCACTAATAATGATATAATTCTTTGTGATGGTGCTTGTGACCGTGGATATCACCAGCTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGCGACGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATCGATATTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACTGACACTTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATAATAACTTGGGACTTCCTTCAGACGATTCTGATGATGATGATTATAATCCTAATGGTCCAGAGGATGTGGAGGTTAAAGGAGGTGAATCTAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAATTTGGAGGAGACGCATCACGAGGATCAATACATGGGTCTTCCTTCTGAAGATTCAGAAGATGATGATTATGATCCTGATGCTCCAAATCTCGATGTTAAAGCCACCGAGGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCTGTTGAACAAGATGGTGGCGTCACATCTGCATCCTTGGATAGTGTTAAGAACAAAGGTTCTAATAAACAAAATCGCAAGAAGCCATCTATAGCTGAAGAACTGTCATCTTTGGTAGAGCCAGATCTCGGTGAAGAAGATTTCACTCCGGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTACCAAAAGCTGTATGAAGAGGCATACCATAGTGCCACTAGTGAGGATGAAGATTGGGCTGCTACCGCTACTCGAAGTAGAAAAAAAAAACTAACTGGCCAAATTACTCCAGTGTCACCAAATGGAAGTGCCTCAAATAATTCCAAACGTTCTGCTAAGAGGAACACCCATCGGCATAAAGTTGATAACACAAATAATTCTCCCACCAAAACACTTGAAGGATGCACGGAATCTGGTTCCAGGGGTAAAAAGCGCGGATCTCCGCACAAAAAACTTGGAGAAGCTGCTGTTCAGAGGCTTTACAAATCTTTCAAAGAAAATCAATATCCAGATCGAGCCACAAAAGAAAGCTTGGCGCAAGAAATTGGACTCACATTTCATCAAGTTGACAAATGGTTTGGAAATTCTCGATGGAGCTTCCGACATTCAACACATATGAAAGCAAGTCCAGGTAGTAATGCTTCGCAGCAGGCCACTGACAGCAAAGCTAAAAAGAAAGGAGAGATGGGTAATGCTTCGCAGCAGGTCACTGACAATGGAGCAGAAAATAAAGGAGAGAAGGAACGTGGATTAGTTTCCCAGGAGACTATTGGAGAAAAATCAAGAACCCCGAGATCTAAGAAAAGGAAGCAGCAGGACACTGACAGTGGAGCTGAAAAGAAAGGAGAGATGGGTAATGCTTCACAGCAGGTCACTGACAATGGAGCCGAAAATAAAGGAGAAAAGGAACGTGAATTAGTTTCCCAGGAGACTATTGGAGAAAAATCAAGAATCCTGCGTTCTAAGAAAAGGAAGCAGCAGGCCACTGACAGCGGAGCTGAAAAGAAAGGAAAGATGGGTAATGCTTCACAGCAGGTTACTGACAATGGAGCAGAAAATAAAGAAGAGAAGGAACCTGTATTAGTTTCACAGAAGACTATTGGAGATAAATCAAGAACCCCAGCGTCTAGGAAAAGGAAGCAATTGTCTGAGCCGCACGCATCTGAAGCAGTGTTGACCCCTAACGACCCAACCCCACCGAAAGTTGAAACAGGCAAGAAAACGAAGAAAAAGAAAGGGAAATGA 3633 0.4206 MGTQQCDLSEKTAKIGAECLDSEQRVLGNEVTDSVIDEKTAHVGSEGLDDESRVLGTVATNSVTDEETAKIGSECLNNEQRVLGTVATNSVIDEKSNQVLGNVTENFVSQLPVPSEHVPICLSDDKSENKCLPNEHGEMSDAVTSLVVEEQTQPVPAQVNSESANKPSDPPSGDGVEDISLPNEHGEMSDAVTSLVVEEQTQPVPAQVKSDSANKPSDPPSGDDVKDISLPNEPGEMSDAVTSLVVEEQTQPIPAQVNTHSANKPSDPPSGDGVKDISLPNEPGEMSDTVTSLVIEEQTQPVPAQVNLHSVNKPSDPPSVDGVKDISLPNEPGEMSDTVTSLVIEELTQPVPAQVNTRSANKPSDPPSGDGVKDISLPNEPGETSNAVAGLVEDHTQSIPAQVNTDSLNKLWDPPSGDVAKNVSSDCSERKSKSLALSRSRQGGKSNSKLPKKKYILRSLGNNDRALRPRDNKPKAPEPINNVADVNSDETKTKKEKKKKKKPRKEGINDQFSRIRAQLRYYLNRMGYEQNLIDAYSGEGWKGGSLEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIDIVNDLLGTSLSLTDTWERVFPEAATAAGSILDNNLGLPSDDSDDDDYNPNGPEDVEVKGGESSSDESEYASASENLEETHHEDQYMGLPSEDSEDDDYDPDAPNLDVKATEESSSSDFTSDSEDLAATIKDNMSVEQDGGVTSASLDSVKNKGSNKQNRKKPSIAEELSSLVEPDLGEEDFTPVSGKRNVERLDYQKLYEEAYHSATSEDEDWAATATRSRKKKLTGQITPVSPNGSASNNSKRSAKRNTHRHKVDNTNNSPTKTLEGCTESGSRGKKRGSPHKKLGEAAVQRLYKSFKENQYPDRATKESLAQEIGLTFHQVDKWFGNSRWSFRHSTHMKASPGSNASQQATDSKAKKKGEMGNASQQVTDNGAENKGEKERGLVSQETIGEKSRTPRSKKRKQQDTDSGAEKKGEMGNASQQVTDNGAENKGEKERELVSQETIGEKSRILRSKKRKQQATDSGAEKKGKMGNASQQVTDNGAENKEEKEPVLVSQKTIGDKSRTPASRKRKQLSEPHASEAVLTPNDPTPPKVETGKKTKKKKGK 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03816 1210 ProSiteProfiles 'Homeobox' domain profile. 939 999 IPR001356 GO:0003677
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 693 953 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 842 881 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 1167 1181 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 735 750 - -
Vivi1g03816 1210 SMART PHD_3 602 655 IPR001965 -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 933 952 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 770 789 - -
Vivi1g03816 1210 Gene3D - 942 1011 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 243 266 - -
Vivi1g03816 1210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 584 664 IPR013083 -
Vivi1g03816 1210 ProSiteProfiles Zinc finger PHD-type profile. 600 657 IPR019787 -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 333 364 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 153 288 - -
Vivi1g03816 1210 SUPERFAMILY Homeodomain-like 937 1000 IPR009057 -
Vivi1g03816 1210 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 373 1156 - -
Vivi1g03816 1210 CDD PHD_PRHA_like 602 654 IPR045876 -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 999 1210 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 797 814 - -
Vivi1g03816 1210 CDD homeodomain 950 999 IPR001356 GO:0003677
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 999 1016 - -
Vivi1g03816 1210 Pfam PHD-finger 602 657 IPR019787 -
Vivi1g03816 1210 ProSitePatterns Zinc finger PHD-type signature. 603 654 IPR019786 -
Vivi1g03816 1210 Pfam Homeodomain 951 995 IPR001356 GO:0003677
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 1092 1128 - -
Vivi1g03816 1210 SMART HOX_1 937 1003 IPR001356 GO:0003677
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 1037 1076 - -
Vivi1g03816 1210 SUPERFAMILY FYVE/PHD zinc finger 592 660 IPR011011 -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 303 510 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 397 411 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 883 906 - -
Vivi1g03816 1210 FunFam Homeobox protein HAT3.1 583 662 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 153 168 - -
Vivi1g03816 1210 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03816 Vivi-Chr1 81269545 81277956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03816 486 996 Homeobox Transcription Factor Family AT3G19510 47.124 7.81e-129 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vivi1g03816 PHD 5.8e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03816 - - psat:127097838 1843.17