Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03815 ATGGGAACTCAACAATGTGATTTGTCTGAAAAAACAGCCAAGATCGGCGCTGAATGTTTAGACAGCGAACAAAGAGTACTTGGTAATGAGGTAACTGATTCTGTTATTGATGAAAAAACAGCTCATGTTGGTTCTGAGGGTTTAGACGACGAAAGCAGAGTACTTGGTACTGTGGCAACCAATTCTGTTACTGATGAAGAAACAGCTAAGATCGGCTCTGAATGTTTAAACAACGAACAGAGAGTACTTGGTACTGTGGCAACCAATTCTGTTATTGATGAAAAATCAAATCAAGTTTTGGGGAATGTGACTGAGAACTTTGTTAGTCAACTGCCTGTACCCTCTGAACATGTCCCTATTTGCTTATCAGATGATAAATCGGAAAACAAATGTCTTCAAGATGTTCAAAATAAACACGGGGAAACGAGTGATGCAGTTGCTTCCGTTGTTGTTGAAGAACCAACACAATCCGTTCTTGCACAAGTGAACTCGGATTCTGCGAATAAGCCATCTGATCCACCTTCTGGAGATGGCGTGAATGATACTAGCCTTCCAAACGAGCATGGTGAAATGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACACAACCTGTTCCTGCTCAAGTGAACTCGGAATCTGCGAATAAGCCATCAGATCCACCTTCTGGAGATGGTGTGGAAGATATTAGTCTTCCAAACGAGCATGGTGAAATGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACGCAACCCGTTCCTGCTCAAGTCAAATCGGATTCTGCGAATAAGCCATCAGATCCACCTTCTGGAGATGATGTGAAAGATATTAGTCTTCCAAATGAGCCCGGTGAAATGAGTGATGCAGTAACTTCCCTCGTTGTTGAAGAACAAACACAACCCATTCCTGCTCAAGTGAACACACATTCTGCGAATAAGCCATCGGATCCACCTTCTGGAGATGGTGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAATGAGTGATACGGTAACTTCCCTTGTTATTGAAGAACAAACACAACCCGTTCCTGCTCAAGTGAACCTACATTCTGTGAATAAGCCATCGGATCCACCTTCTGTAGATGGCGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAATGAGTGATACAGTAACTTCCCTTGTTATTGAAGAACTAACACAACCCGTTCCTGCTCAAGTAAACACACGTTCTGCGAATAAGCCATCGGATCCACCTTCTGGAGATGGCGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAACAAGCAACGCAGTAGCCGGCCTTGTTGAAGACCACACACAGTCCATTCCTGCTCAAGTGAATACAGATTCTTTGAACAAGCTATGGGATCCACCTTCTGGAGATGTTGCTAAAAATGTTAGCTCTGATTGTTCAGAAAGAAAGTCTAAAAGCTTAGCTCTTTCAAGATCGAGACAAGGGGGTAAAAGTAACTCAAAATTACCGAAGAAGAAGTATATATTGAGGTCGTTGGGAAACAATGACAGGGCTCTGCGGCCAAGAGATAATAAACCTAAAGCTCCTGAACCAATTAATAATGTTGCTGATGTTAACAGTGATGAAACAAAGACAAAAAAAGAGAAGAAGAAAAAGAAAAAGCCAAGAAAAGAGGGAATTAATGATCAATTTTCTAGAATCAGAGCTCAATTGAGATACTATTTAAACCGAATGGGATACGAACAGAACTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGAGGCAGTTTGGAAAAATTAAAGCCCGAGAAGGAGATTCAACGGGCTAAGTCTGAAATTCTTCGACGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCTGAAGGAAAGCTTCCTGAATCATTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTCTGTGCAAAATGCCAGACCAAAGTGTTGGGCACTAATAATGATATAATTCTTTGTGATGGTGCTTGTGACCGTGGATATCACCAGCTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGCGACGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATCGATATTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACTGACACTTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATAATAACTTGGGACTTCCTTCAGACGATTCTGATGATGATGATTATAATCCTAATGGTCCAGAGGATGTGGAGGTTAAAGGAGGTGAATCTAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAATTTGGAGGAGACGCATCACGAGGATCAATACATGGGTCTTCCTTCTGAAGATTCAGAAGATGATGATTATGATCCTGATGCTCCAAATCTCGATGTTAAAGCCACCGAGGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCTGTTGAACAAGATGGTGGCGTCACATCTGCATCCTTGGATAGTGTTAAGAACAAAGGTTCTAATAAACAAAATCGCAAGAAGCCATCTATAGCTGAAGAACTGTCATCTTTGGTAGAGCCAGATCTCGGTGAAGAAGATTTCACTCCGGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTACCAAAAGCTGTATGAAGAGGCATACCATAGTGCCACTAGTGAGGATGAAGATTGGGCTGCTACCGCTACTCGAAGTAGAAAAAAAAAACTAACTGGCCAAATTACTCCAGTGTCACCAAATGGAAGTGCCTCAAATAATTCCAAACGTTCTGCTAAGAGGAACACCCATCGGCATAAAGTTGATAACACAAATAATTCTCCCACCAAAACACTTGAAGGATGCACGGAATCTGGTTCCAGGGGTAAAAAGCGCGGATCTCCGCACAAAAAACTTGGAGAAGCTGCTGTTCAGAGGCTTTACAAATCTTTCAAAGAAAATCAATATCCAGATCGAGCCACAAAAGAAAGCTTGGCGCAAGAAATTGGACTCACATTTCATCAAGTTGACAAATGGTTTGGAAATTCTCGATGGAGCTTCCGACATTCAACACATATGAAAGCAAGTCCAGGTAGTAATGCTTCGCAGCAGGCCACTGACAGCAAAGCTAAAAAGAAAGGAGAGATGGGTAATGCTTCGCAGCAGGTCACTGACAATGGAGCAGAAAATAAAGGAGAGAAGGAACGTGGATTAGTTTCCCAGGAGACTATTGGAGAAAAATCAAGAACCCCGAGATCTAAGAAAAGGAAGCAGCAGGACACTGACAGTGGAGCTGAAAAGAAAGGAGAGATGGGTAATGCTTCACAGCAGGTCACTGACAATGGAGCCGAAAATAAAGGAGAAAAGGAACGTGAATTAGTTTCCCAGGAGACTATTGGAGAAAAATCAAGAATCCTGCGTTCTAAGAAAAGGAAGCAGCAGGCCACTGACAGCGGAGCTGAAAAGAAAGGAAAGATGGGTAATGCTTCACAGCAGGTTACTGACAATGGAGCAGAAAATAAAGAAGAGAAGGAACCTGTATTAGTTTCACAGAAGACTATTGGAGATAAATCAAGAACCCCAGCGTCTAGGAAAAGGAAGCAATTGTCTGAGCCGCACGCATCTGAAGCAGTGTTGACCCCTAACGACCCAACCCCACCGAAAGTTGAAACAGGCAAGAAAACGAAGAAAAAGAAAGGGAAATGA 3789 0.4217 MGTQQCDLSEKTAKIGAECLDSEQRVLGNEVTDSVIDEKTAHVGSEGLDDESRVLGTVATNSVTDEETAKIGSECLNNEQRVLGTVATNSVIDEKSNQVLGNVTENFVSQLPVPSEHVPICLSDDKSENKCLQDVQNKHGETSDAVASVVVEEPTQSVLAQVNSDSANKPSDPPSGDGVNDTSLPNEHGEMSDAVTSLVVEEQTQPVPAQVNSESANKPSDPPSGDGVEDISLPNEHGEMSDAVTSLVVEEQTQPVPAQVKSDSANKPSDPPSGDDVKDISLPNEPGEMSDAVTSLVVEEQTQPIPAQVNTHSANKPSDPPSGDGVKDISLPNEPGEMSDTVTSLVIEEQTQPVPAQVNLHSVNKPSDPPSVDGVKDISLPNEPGEMSDTVTSLVIEELTQPVPAQVNTRSANKPSDPPSGDGVKDISLPNEPGETSNAVAGLVEDHTQSIPAQVNTDSLNKLWDPPSGDVAKNVSSDCSERKSKSLALSRSRQGGKSNSKLPKKKYILRSLGNNDRALRPRDNKPKAPEPINNVADVNSDETKTKKEKKKKKKPRKEGINDQFSRIRAQLRYYLNRMGYEQNLIDAYSGEGWKGGSLEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIDIVNDLLGTSLSLTDTWERVFPEAATAAGSILDNNLGLPSDDSDDDDYNPNGPEDVEVKGGESSSDESEYASASENLEETHHEDQYMGLPSEDSEDDDYDPDAPNLDVKATEESSSSDFTSDSEDLAATIKDNMSVEQDGGVTSASLDSVKNKGSNKQNRKKPSIAEELSSLVEPDLGEEDFTPVSGKRNVERLDYQKLYEEAYHSATSEDEDWAATATRSRKKKLTGQITPVSPNGSASNNSKRSAKRNTHRHKVDNTNNSPTKTLEGCTESGSRGKKRGSPHKKLGEAAVQRLYKSFKENQYPDRATKESLAQEIGLTFHQVDKWFGNSRWSFRHSTHMKASPGSNASQQATDSKAKKKGEMGNASQQVTDNGAENKGEKERGLVSQETIGEKSRTPRSKKRKQQDTDSGAEKKGEMGNASQQVTDNGAENKGEKERELVSQETIGEKSRILRSKKRKQQATDSGAEKKGKMGNASQQVTDNGAENKEEKEPVLVSQKTIGDKSRTPASRKRKQLSEPHASEAVLTPNDPTPPKVETGKKTKKKKGK 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03815 1262 CDD homeodomain 1002 1051 IPR001356 GO:0003677
Vivi1g03815 1262 ProSiteProfiles Zinc finger PHD-type profile. 652 709 IPR019787 -
Vivi1g03815 1262 SUPERFAMILY Homeodomain-like 989 1052 IPR009057 -
Vivi1g03815 1262 ProSitePatterns Zinc finger PHD-type signature. 655 706 IPR019786 -
Vivi1g03815 1262 Pfam PHD-finger 654 709 IPR019787 -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 1089 1128 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 1144 1180 - -
Vivi1g03815 1262 SMART PHD_3 654 707 IPR001965 -
Vivi1g03815 1262 SMART HOX_1 989 1055 IPR001356 GO:0003677
Vivi1g03815 1262 ProSiteProfiles 'Homeobox' domain profile. 991 1051 IPR001356 GO:0003677
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 449 463 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 935 958 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 246 269 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 1051 1068 - -
Vivi1g03815 1262 SUPERFAMILY FYVE/PHD zinc finger 644 712 IPR011011 -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 399 416 - -
Vivi1g03815 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 716 IPR013083 -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 787 802 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 1051 1262 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 985 1003 - -
Vivi1g03815 1262 FunFam Homeobox protein HAT3.1 635 714 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 197 220 - -
Vivi1g03815 1262 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 468 1217 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 1219 1233 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 161 340 - -
Vivi1g03815 1262 Pfam Homeodomain 1003 1047 IPR001356 GO:0003677
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 894 933 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 822 841 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 849 866 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 295 318 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 399 562 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 161 190 - -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 355 387 - -
Vivi1g03815 1262 Gene3D - 994 1063 - -
Vivi1g03815 1262 CDD PHD_PRHA_like 654 706 IPR045876 -
Vivi1g03815 1262 MobiDBLite consensus disorder prediction 745 1003 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03815 Vivi-Chr1 81269545 81277956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03815 538 1048 Homeobox Transcription Factor Family AT3G19510 47.124 1.35e-128 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vivi1g03815 PHD 6.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03815 - - psat:127097838 2001.1