Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03785 ATGGCAATCCATCACCACCACCATCAGCAACAACTTCAACACAGCTCTCTTCTCGACGCTCTTTACTGCGATGAAGAAAAATTCGAAGAAGACGAAGATGTTTCGTCTCAACAAAGTGATGTCACAACAAACAGCGACAACAGCATCCTAGACTCCACTTCGCTTTATCCTCTTCTTCTCTTGGAACAAAACTTGTTCTTTCAAGATGAAGAACTCATCACGCTTTTCTCCAAGGAAAAAACCCAGCAAGAAACATACTACGAGGATCTGAAAAATGTCGTGGATTTTGTTTCTCTCTCTCAACCTCGTCGTGAAGCTGTTCAATGGATGCTTCAAGTCAATGCTCATTACGGCTTTTCACCTCTCACCGCAACACTTGCTGTTACTTACTTCGATAGGTTCCTTCTAACCTTCCATTTCCAAAAGGATAAGCCATGGATGATTCAGCTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCCTAGACCTTCAAGTGCAAGATACTAAATATGTGTTTGAAGCAAAAACTATTCAGAGAATGGAGCTATTGATTCTGTCTACACTGAAATGGAAGATGCATCCAGTGACACCACACTCTTTTCTAGATCATATTATAACAAGGCTTGGTTTGAAAACTAATCTACATTGGGAGTTTTTAAGACGCTGTGAGAATCTTCTTCTATCTGTACTTTTAGATTCAAGATTTGTTGGGTGTGTTCCTTCTGTGTTGGCTACTGCTACAATGCTGCATGTTATAGATCAGATTGAAGAGAGTGATGATAATGGTGTGGACTACAAAAATCAGCTTCTTAATATTCTCAAAATCAATAAGGAGAAAGTGGATGAATGTTATAATGTGATTCTTGAGGTTACTAATGGAAATAGTTATGGTCATAAACGAAAATATGAACAAGTTCCTGGAAGTCCAAGTGGCGTAATTGATGCTGTTTTTAGTTCTGATGGTTCCAATGATTCATGGAAAGTGGGTTCATCCTCTTATTCAACCTCAGAGCCTGTGTTTAAGAAAACAAAAACTCAAGGGCAAAATAGGAATTTGTCACCTCTTAATAGGGCTATTGTTGGAATTCTTGCCACTGCTACTTCTCCTTAA 1140 0.3886 MAIHHHHHQQQLQHSSLLDALYCDEEKFEEDEDVSSQQSDVTTNSDNSILDSTSLYPLLLLEQNLFFQDEELITLFSKEKTQQETYYEDLKNVVDFVSLSQPRREAVQWMLQVNAHYGFSPLTATLAVTYFDRFLLTFHFQKDKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTPHSFLDHIITRLGLKTNLHWEFLRRCENLLLSVLLDSRFVGCVPSVLATATMLHVIDQIEESDDNGVDYKNQLLNILKINKEKVDECYNVILEVTNGNSYGHKRKYEQVPGSPSGVIDAVFSSDGSNDSWKVGSSSYSTSEPVFKKTKTQGQNRNLSPLNRAIVGILATATSP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03785 379 Pfam Cyclin, C-terminal domain 205 313 IPR004367 -
Vivi1g03785 379 CDD CYCLIN_AtCycD-like_rpt1 103 200 - -
Vivi1g03785 379 Gene3D - 100 203 - -
Vivi1g03785 379 FunFam D3-type cyclin 96 203 - -
Vivi1g03785 379 SMART Cyclin_C_2 205 321 IPR004367 -
Vivi1g03785 379 CDD CYCLIN_AtCycD-like_rpt2 205 297 - -
Vivi1g03785 379 PANTHER CYCLINS 73 299 IPR039361 -
Vivi1g03785 379 SUPERFAMILY Cyclin-like 67 203 IPR036915 -
Vivi1g03785 379 Pfam Cyclin, N-terminal domain 91 202 IPR006671 -
Vivi1g03785 379 ProSitePatterns Cyclins signature. 103 134 IPR006671 -
Vivi1g03785 379 FunFam CYCLIN D32 204 295 - -
Vivi1g03785 379 Gene3D - 204 295 - -
Vivi1g03785 379 SMART cyclin_7 108 196 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03785 Vivi-Chr1 80531853 80533985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03785 1 300 Core Cell Cycle Gene Families AT4G34160 55.298 4.72e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03785 K14505 - gmx:547740 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03785 1 80531853 80533985 Vivi1g03785 1 80531853 80533985 ECH
Vivi3g01873 3 30307320 30308913 Vivi1g03785 1 80531853 80533985 ECH