Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03784 ATGGATCCAGTGTCTGCTGATGTGTCTAAGCCACCTCCTTTGAAAGTACCATCTACGATACATCCTGCTAAAGAGGATGATGGTCAAGCTTCTGCTGCTGTAGCATCTGGACAAGATAATTCTGCCCGTGAAGCACCGTCTAGGCTATCTCCCACTGGCATATCTTCTTGGGCCAAAAATTTAAAAGTTTCCCCGTCGTTTTCTGGATCCCAAGACGAGTCTTCAAGTGGAAATGTCGGGAAATCAGCCTTTGCACGCCTTACGAGTAATCTGGGATTGCGGTTGTCTCCAAAGTCTCCTGTGGTAGATGAGAATTCCGATGAACCTGCAGCACAGTCTAATTTGTTTGGAAGTATCACAAAGGGCCTGGTTGACTCTTCGAAGAATGCGGTGAAAGCTGTGCAGGTTAAAGCACGGCATGCTGTTTCTCAAAATAAACGCAGATACCAGGAAGGGGGTTTTGATTTAGATATGACATATATCACAGAAAACATTATTGCAATGGGGTTCCCTGCTGGTGACATGAGCTCTGGGTTTTTTGGTTATGTTGAAGGATTTTATAGAAATCATATGGAAGAAGTGATCAAGTTTTTTGAGACTAACCATAAGGACAAGTACAAAGTGTATAATCTCTGTTTGGAGCGGCTGTATGATGCATCGTTGTTTGAGGGCAAGGTGGCTAGCTTCCCATTTGATGATCATAATTGCCCACCGATTCAACTGATTGTATCTTTTTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTGGTGGTTGTCCACTGTAAAGCTGGAATGGCCAGGACAGGGTTGATGATTTCCAGTCTTTTACTATTCTTAAAGTTTTTCCCAACTGCTGAGGAGTCGATGGATTATTATAATCAGAAAAGATGTATTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAGTACTTTGAACGGATCTTGACTTACTTTAATGGCGAGTGTCCACCTCCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGTCCTTACTGGATCCGGCCCTCTATAACCATTTCAAATCATAATGGTGTGTTGTTCTCCACCAAAAAGCATCCAAGAACCAAAGATCTTTTGCCCGAAGATTTTTGGTTTACTGCACCAAAGAAGGGAGTTATGGTCTTTGCTTTGCCCGGAGAGCCTGGTCTCACAGAGTTGGCTGGTGACTTCAAAATTCACTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTAAACACAACTATGACAGAAAACAGGAAAGTTTTGACCACCAATGATCTCGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTCCAGGTTGAAATTGTGCTGGTGGATTATAATGGCAATGTTGTAACTTCCGATGCTGAAGCTACAAAGAAATCTGACGAGAGTTCAAGTAAAAGTCCTGCCCCAGCTGAGGTGAGCACCCCCGCACCAAATGCAGACAAAGAGTCTAGGGATGGGGATCAAGACAAAGATGATGATGTATTTTCAGATGGTGAGGCAGAGCATCCCGTTTCTTCAAGAAACAAGCAAACAAAGGCACCTTCTGAAGCAGTTGAAACAGCCACCAAAGAGTCCGAGGCGAACAAAACTTCAAATCAAATAACAAATATAACGCATGCAACAGAACAAGTTTCTTTGGGTAATAAGAACTCTACACCAAGTCATAGTACTGGTCAGCCGAAGAATGATGTTGGTGGAAAAACTGTGTCCGGTCTTGACGGACCCAGCTCAGAAAGTGAGTTTAAGGCCATGGCAGCAGATGCTTCTGTCTTTACATTCGGAGACGATGAAGACTATGAAAGTGATTGA 1857 0.4335 MDPVSADVSKPPPLKVPSTIHPAKEDDGQASAAVASGQDNSAREAPSRLSPTGISSWAKNLKVSPSFSGSQDESSSGNVGKSAFARLTSNLGLRLSPKSPVVDENSDEPAAQSNLFGSITKGLVDSSKNAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETNHKDKYKVYNLCLERLYDASLFEGKVASFPFDDHNCPPIQLIVSFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERILTYFNGECPPPRRCMLRGFRLHRCPYWIRPSITISNHNGVLFSTKKHPRTKDLLPEDFWFTAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLTTNDLDGFDKRKLPSPGFQVEIVLVDYNGNVVTSDAEATKKSDESSSKSPAPAEVSTPAPNADKESRDGDQDKDDDVFSDGEAEHPVSSRNKQTKAPSEAVETATKESEANKTSNQITNITHATEQVSLGNKNSTPSHSTGQPKNDVGGKTVSGLDGPSSESEFKAMAADASVFTFGDDEDYESD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03784 618 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Vivi1g03784 618 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Vivi1g03784 618 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Vivi1g03784 618 MobiDBLite consensus disorder prediction 33 56 - -
Vivi1g03784 618 MobiDBLite consensus disorder prediction 494 522 - -
Vivi1g03784 618 SMART PTEN_C2_2 331 459 IPR014020 -
Vivi1g03784 618 CDD PTP_PTEN 157 322 IPR045101 GO:0016791
Vivi1g03784 618 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Vivi1g03784 618 MobiDBLite consensus disorder prediction 1 56 - -
Vivi1g03784 618 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 567 - -
Vivi1g03784 618 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 261 300 IPR000387 GO:0016311|GO:0016791
Vivi1g03784 618 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Vivi1g03784 618 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 403 457 IPR035892 -
Vivi1g03784 618 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Vivi1g03784 618 MobiDBLite consensus disorder prediction 540 580 - -
Vivi1g03784 618 MobiDBLite consensus disorder prediction 468 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03784 Vivi-Chr1 80519594 80526182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03784 33 618 Protein tyrosine phosphatase (PTP) family AT3G19420 68.395 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03784 K01110 - gmx:100784003 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03784 1 80519594 80526182 Vivi1g03784 1 80519594 80526182 ECH
Vivi2g03385 2 138869125 138875976 Vivi1g03784 1 80519594 80526182 PCT