Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03770 ATGGTGGTTTTTGGCGGGAAAAAGCTGAACCAATTTGTCACCGGCTTCGGCGGCAGCGGCCTTGGCCAGATAGTCGCCGCCGTCGCTGTATCCTTCCTTGTTCGAATCTTCTCCGCTCCCGGTCCCGCTCTATTGCCGGAGAACGACGATGACGACTGTGTTCCGAGTAGCGATTCCCCCGACGGTGAAACTCCTACTCCCTCAGGAAAGGTCACGCCGGTTACAATTCGCTGGAATAGTATTAATTGTTCGCTATCTGATAAATCCTCCAAGTCTGTGAGGTTTCTGCTTAAAAATGTGAGCGGAGAAGCAAAACCAGGAAAGTTATTAGCCATAATGGGGCCTTCAGGTTCTGGGAAGACAACATTGCTCAATGTTCTTGCTGGTCAGCTCGCAGCTTCGCCTCGGCTTCATTTGAGTGGCCTTTTGGAGTTTAATGGAAAACCTAGTTCTAGGAATAGTTACAAGTTTGCTTATGTGAGACAGGAGGATCTCTTCTTCTCACAGCTTACTGTGAGGGAAACATTGTCTCTTGCTATAGAGCTACAGCTTCCCAATATATCTTCTGTTGAAGAGAGGGATGAACATGTCAACAATCTCCTATTCAAGCTTGGCTTGGTCAGTTGTGCCGATACTAATGTTGGTGATGCCAAAGTTCGTGGAATAAGTGGTGGTGAAAAGAAGCGTTTATCCTTGGCATGTGAACTGCTTGCAAGCCCATCTGTTATTTTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAAGTTATGGAAACTCTCCGACAACTTGCACTCGATGGTCATACAGTAATTTGCTCAATACATCAGCCAAGAGGTTCAGTGTATAGCAAATTTGATGACATTGTCTTGCTAACTGAGGGTTCACTTGTTTATGCTGGTCCTGCCGGCAATGAACCGTTGGAGTACTTCTCCAAATTCGGGTACCACTGCCCAGATCATGTAAATCCTGCAGAATTTTTGGCCGATCTTATATCCATAGACTACAGTTCTTCTGACAGTGTCCATTCTTCTAAAAAAAGGATCGACGGGCTTGTTGAGTCCCTCTCCCAAAAACTATCCACAGTAATATATGCAACTCCAATTACTATAGACGACCTCTCAAAAAGTAGAAAGAGAATCAGCAAGAGGACTATAGCAAAAAGGAAAGGGGGATGGTGGAAACAATTCTGGTTGCTTCTTAGACGGGCATGGATGCAGGCTTCCCGCGATGCACCTACCAACAAAGTTCGGGCGAGGATGTCAATTGCATCAGCAGTTATCTTTGGGTCAGTTTTCTGGAGAATGGGAAAATCTCAGACTTCAATTCAAGACAGAATGGGATTGCTTCAGGTTGCTGCAATAAACACAGCTATGGCTGCTCTCACAAAGACTGGAGGTGTGTTTCCAAAGGAACGGGCAATTGTTGATAGAGAACGTGCTAAAGGTTCCTATTCCTTGGGCCCCTATCTGTTTTCGAAACTGTTGGCTGAGATTCCAATTGGAGCAGCATTTCCATTAATGTTCGGTGCTGTTTTGTACCCAATGGCACGTCTCCATCCTACTTTGATGAGATTTGGGAAATTCTGTGGAATCGTAACTGCGGAGTCTTTTGCTGCATCTGCGATGGGTCTTACTGTTGGTGCTATGGTTCCAACTACTGAAGCAGCAATGGCGGTAGGCCCCTCTCTTATGACAGTTTTTATAGTATTTGGTGGCTACTATGTTAACCCTGAGAATACACCGATTATCTTCCGCTGGATTCCTAGTGCTTCTCTGATAAGATGGGCCTTTCAAGGACTTTGCATCAATGAATTTCGTGATCTTCAATTTGATCACCAGCATTCATTTGATATTCAAACTGGAGAACAGGCACTAGAGCGTCTTTCCTTTGGAAGAAGTACGATTAGAGATACGCTGCTAGTGCAAAATAGAATATTGTTATTTTGGTATTGTACCACCTACCTTCTCCTTGAGAAAAACAAACCCAAATACCAGCAACTAGAAACAACCCCTCCCGACCATGACAAGCCGCATTTAAAACTCGAGGAGCTCAATTCTGAACAAGCTGATCAGACATATGAAGCACCCGAGGTTAACCAAGATGGTTCCGAGGAGCCCCTTGAGTCACCTGAAATAGACCCTGTTGGCTCTTTTATCCTAGAAGGTGCTCAGTAG 2187 0.4518 MVVFGGKKLNQFVTGFGGSGLGQIVAAVAVSFLVRIFSAPGPALLPENDDDDCVPSSDSPDGETPTPSGKVTPVTIRWNSINCSLSDKSSKSVRFLLKNVSGEAKPGKLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGLLEFNGKPSSRNSYKFAYVRQEDLFFSQLTVRETLSLAIELQLPNISSVEERDEHVNNLLFKLGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLRQLALDGHTVICSIHQPRGSVYSKFDDIVLLTEGSLVYAGPAGNEPLEYFSKFGYHCPDHVNPAEFLADLISIDYSSSDSVHSSKKRIDGLVESLSQKLSTVIYATPITIDDLSKSRKRISKRTIAKRKGGWWKQFWLLLRRAWMQASRDAPTNKVRARMSIASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTGGVFPKERAIVDRERAKGSYSLGPYLFSKLLAEIPIGAAFPLMFGAVLYPMARLHPTLMRFGKFCGIVTAESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPSASLIRWAFQGLCINEFRDLQFDHQHSFDIQTGEQALERLSFGRSTIRDTLLVQNRILLFWYCTTYLLLEKNKPKYQQLETTPPDHDKPHLKLEELNSEQADQTYEAPEVNQDGSEEPLESPEIDPVGSFILEGAQ 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03770 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 307 IPR027417 -
Vivi1g03770 728 ProSitePatterns ABC transporters family signature. 222 236 IPR017871 GO:0005524|GO:0016887
Vivi1g03770 728 Gene3D - 72 310 IPR027417 -
Vivi1g03770 728 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 322 IPR003439 GO:0005524
Vivi1g03770 728 Pfam ABC-2 type transporter 279 345 IPR043926 GO:0140359
Vivi1g03770 728 MobiDBLite consensus disorder prediction 47 72 - -
Vivi1g03770 728 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 69 624 - -
Vivi1g03770 728 MobiDBLite consensus disorder prediction 670 728 - -
Vivi1g03770 728 Pfam ABC transporter 97 249 IPR003439 GO:0005524
Vivi1g03770 728 Pfam ABC-2 type transporter 399 609 IPR013525 GO:0016020|GO:0140359
Vivi1g03770 728 SMART AAA_5 106 299 IPR003593 GO:0016887
Vivi1g03770 728 MobiDBLite consensus disorder prediction 672 691 - -
Vivi1g03770 728 FunFam ABC transporter G family member 7 74 312 - -
Vivi1g03770 728 CDD ABCG_EPDR 73 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03770 Vivi-Chr1 80334776 80347217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03770 96 316 Calmodulin-binding Proteins AT2G36910 28.821 2.85e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03770 K05681 - gmx:100788256 1229.93