Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03760 ATGGGGGATCATTTTGATTTACTGGTTGATCGATTGCTTACGGAATCGACGTTAGAGGCTGCGCTTGAAAGCAGAAAGCGGGCGATGCAGGCTGCGTCTTCGGTGGTGAATGACGCGGAGATTGATCTGTCTTTGTTGAAAATGGGGATGGATAGTGTCAAATGTTCAGGGAAGATGGTGGAATGTAGGATATGTCATGATGATGACGATGATTCGAATATGGAGACACCTTGCTCTTGTTGTGGTAGTTTAAAGTATGCACACCGAAGATGTATACAACGGTGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCCATTCAAACCTGATTATACAGCTCCTCCTCCACTATTTCAATTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAAATTTCACGAAGAGACTTAAATAGTACTCATTTAGTTAGCATGGTTCCCTCTGATCAAAGCCTTAACACTTCTAACTATGATCAGTATTCCGCCTCTTCTTCAGGAAGTTTGATATGCTGTCGTTCGGTTGCTATCATTTTCATGGTTCTGCTGATTTTAAGACATACACTTCCCCTACTAATTAGTGGAACTCAAGACTTTTATTTCCCGCTTTTCATGGTGTTATTATTTCGGAGTGCTGGAATTGTTGTACCTATATACTTCATGATTAGAGCAGTGGCACTAATCCAGCGACATCGGAGACAACATCGAGAGCATCCTAGTGTCTTGGTAAGTTCATCGGATGATGAAATCGAGCCAGCAGGTTTGCAGCCTCAACCTCATATCATGCATTTAGTGTAA 810 0.4272 MGDHFDLLVDRLLTESTLEAALESRKRAMQAASSVVNDAEIDLSLLKMGMDSVKCSGKMVECRICHDDDDDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPDYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPSDQSLNTSNYDQYSASSSGSLICCRSVAIIFMVLLILRHTLPLLISGTQDFYFPLFMVLLFRSAGIVVPIYFMIRAVALIQRHRRQHREHPSVLVSSSDDEIEPAGLQPQPHIMHLV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03760 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Vivi1g03760 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Vivi1g03760 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Vivi1g03760 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Vivi1g03760 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Vivi1g03760 269 FunFam Zinc finger family protein 50 117 - -
Vivi1g03760 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 118 IPR013083 -
Vivi1g03760 269 MobiDBLite consensus disorder prediction 242 269 - -
Vivi1g03760 269 SMART ringv_2 61 108 IPR011016 GO:0008270
Vivi1g03760 269 SUPERFAMILY RING/U-box 60 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03760 Vivi-Chr1 80044945 80047769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03760 61 108 C3H Transcription Factor Family AT2G37950 45.098 1.66e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03760 - - vun:114190540 456.447