LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g03751	ATGTCAAGCAGAAGGAAAGGTCAAGGTCGCCAAAAGACAGAGATGAAAAAGATGAGCAATGAAAGTCATCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTCTGTGGTGTAGATATTGCTCTTGTTGTATTTTCACCGAGCGAAAAAGTATTTTCTTTTGGTCATCCCAATATTTATACGGTCATAGATCGATATCTTTCTCTGAGCCCACCCGAAAACAACGACACATTGCAATTTATTGAGGCTCACCGCAGCGTCAACGTGCGCGATCTTAATGCTCAACTAACTGAAATCAACAACACTTTGGATGCTGAGAAGAAGCTCGGTGATGAGCTAAGTCGTATTCGCAAGGCGGTCGAAGCTCAGTTTTGGTGGGCTTGTCCATTTGATGGAATGAATATGGCTCAACTTGAACTATTAAAGAAAGCTTTGGAGCAACTTAAGATTCTTGTTGTTGAACATGCTGACAAGGTTTTAATTCAGGGTGCTCCTAGCCAAACACTTCCAGCTTTTGTTGGCAATGATTCATCTTCTAACATTTATCTCCATCATCAGCCAAATCCTCAACATCCTCAAATGTTTCAACCAAAACATTTTTAA	633	0.4139	MSSRRKGQGRQKTEMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGVDIALVVFSPSEKVFSFGHPNIYTVIDRYLSLSPPENNDTLQFIEAHRSVNVRDLNAQLTEINNTLDAEKKLGDELSRIRKAVEAQFWWACPFDGMNMAQLELLKKALEQLKILVVEHADKVLIQGAPSQTLPAFVGNDSSSNIYLHHQPNPQHPQMFQPKHF	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g03751	210	SMART	madsneu2	8	67	IPR002100	GO:0003677\|GO:0046983
	Vivi1g03751	210	Gene3D	-	20	86	IPR036879	GO:0003677\|GO:0046983
	Vivi1g03751	210	Gene3D	-	87	174	-	-
	Vivi1g03751	210	FunFam	Agamous-like MADS-box protein AGL62	20	86	-	-
	Vivi1g03751	210	Coils	Coil	148	168	-	-
	Vivi1g03751	210	CDD	MADS_MEF2_like	9	80	IPR033896	GO:0000977\|GO:0045944
	Vivi1g03751	210	ProSiteProfiles	MADS-box domain profile.	8	68	IPR002100	GO:0003677\|GO:0046983
	Vivi1g03751	210	MobiDBLite	consensus disorder prediction	1	24	-	-
	Vivi1g03751	210	PANTHER	MADS BOX PROTEIN	10	162	-	-
	Vivi1g03751	210	MobiDBLite	consensus disorder prediction	190	210	-	-
	Vivi1g03751	210	Coils	Coil	99	119	-	-
	Vivi1g03751	210	PRINTS	MADS domain signature	45	66	IPR002100	GO:0003677\|GO:0046983
	Vivi1g03751	210	PRINTS	MADS domain signature	30	45	IPR002100	GO:0003677\|GO:0046983
	Vivi1g03751	210	PRINTS	MADS domain signature	10	30	IPR002100	GO:0003677\|GO:0046983
	Vivi1g03751	210	SUPERFAMILY	SRF-like	9	86	IPR036879	GO:0003677\|GO:0046983
	Vivi1g03751	210	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	17	64	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g03751	Vivi-Chr1	79948392	79949024	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g03751	5	189	Type I MADS-box Gene Family	AT5G60440	49.468	9.70e-56	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Vivi1g03751		SRF-TF	4e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g03751	-		-	mtr:11438274	294.278