Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03750 ATGTCAAGTGTAAGGAAAGGTCGAGGTCGTCAAAAGATCAACATGAAAAAGATGAGTAACAAGAGCAACATGCAAGTCACTTTCTCAAGACGTCGTAGCGGACTCTTCAAAAAAGCCAGTGAACTTTGCACCCTATGTGATACAGAAATTGTTCTTGTTGTATTCTCACCTAGTGAAAAGGTATTTTCTTTTGGCCACCCTAATATTGATATAGTCATAGATCGATATTTGTCTCAAGTTCCACCCCAAAACAATGACATCATCCAATTCATTAATGCTCGGCGTAGAGCTAGCGCGTGTGAGCTCAATGCTCAACTAGCTAAAATCAACAACACACTTGATGTTGAAAAGAAGCTTGGTGATGAATTGAGCCTTGTGTGCAAAGAGGCAAAGACTCAGTTTTGGGGGACTTGTTCAATTGATAGGATGAATTGGGCTCAACTTGAAATATTCAAAATGGCTTTAGAGGAGCTTGGGAATCTTGTTGCAATACATGTTGATAGGCTTGTAATTCATGATACTCCTACTCAGATTCATCCATTTTTGGTTGACAATGTTTCATCCTCTAACATCGGTTTCCAACACCAGCTAAATCCTCAACAAGGTCAAATGTTTTCGTCACAAAGTTTTCAGAACCAGATGTGGCATCGTTAG 654 0.396 MSSVRKGRGRQKINMKKMSNKSNMQVTFSRRRSGLFKKASELCTLCDTEIVLVVFSPSEKVFSFGHPNIDIVIDRYLSQVPPQNNDIIQFINARRRASACELNAQLAKINNTLDVEKKLGDELSLVCKEAKTQFWGTCSIDRMNWAQLEIFKMALEELGNLVAIHVDRLVIHDTPTQIHPFLVDNVSSSNIGFQHQLNPQQGQMFSSQSFQNQMWHR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03750 217 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Vivi1g03750 217 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vivi1g03750 217 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vivi1g03750 217 PANTHER MADS BOX PROTEIN 10 159 - -
Vivi1g03750 217 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vivi1g03750 217 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vivi1g03750 217 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vivi1g03750 217 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vivi1g03750 217 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vivi1g03750 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vivi1g03750 217 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03750 Vivi-Chr1 79874981 79875634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03750 4 193 Type I MADS-box Gene Family AT5G60440 45.596 4.45e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g03750 SRF-TF 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03750 - - vvo:131610385 310.457