Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03749 ATGTCAAGCGGAAGGAAAAGTCGAGGCCGTCAAAAGATCGAAATGAAAAAGATGAGCAACGAGAGTAACCTGCAAGTGACTTCCTCAAGACGTCGTAGCAGACTCTTCAAGAAAGCTAGTGAACTTTGCACCCTATGTGATGCAGAAATCGCTCTTGTTGTATTCTCACCAACTGAAAAGGTATTTTCTTTTGGTCACCCTAATATTGATTTAGTCATAGATCGATATCTCTCTCGAGTTCCACCCGAAAACAATGACACCATGAAATTCATTGAGGCTCGTCGTAGAGCTAATGCGTGTGATCTCAATGCTAAGCTTGCTCAAATCAACAACACACTAGATGTTGAAAAGATTCTTGGTGCTGAATTAAGCCATATGTGCAAAGCGGCTAAGGCTCGGTTTTGGGGGACTTGTTCAATTGATAGGATGAATTGGGCTCAACTTGAAATATTCAAGAAGGCTTTGGAGGAGCTTAAGAATCTTGTTTCACAACAAGGTGATAGGCGTGTAATTCATGATACTTCTACTCAAACTCTTCCATTTTATGTTGACAATGCTTCATCCTCTAGCATCCCTTTCAAGCACCAATAA 591 0.4095 MSSGRKSRGRQKIEMKKMSNESNLQVTSSRRRSRLFKKASELCTLCDAEIALVVFSPTEKVFSFGHPNIDLVIDRYLSRVPPENNDTMKFIEARRRANACDLNAKLAQINNTLDVEKILGAELSHMCKAAKARFWGTCSIDRMNWAQLEIFKKALEELKNLVSQQGDRRVIHDTSTQTLPFYVDNASSSSIPFKHQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03749 196 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vivi1g03749 196 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vivi1g03749 196 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vivi1g03749 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vivi1g03749 196 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vivi1g03749 196 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vivi1g03749 196 SUPERFAMILY SRF-like 9 86 IPR036879 GO:0003677|GO:0046983
Vivi1g03749 196 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Vivi1g03749 196 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vivi1g03749 196 MobiDBLite consensus disorder prediction 1 30 - -
Vivi1g03749 196 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vivi1g03749 196 PANTHER MADS BOX PROTEIN 10 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03749 Vivi-Chr1 79850914 79851504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03749 5 190 Type I MADS-box Gene Family AT5G60440 48.148 2.78e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g03749 SRF-TF 5.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03749 - - vvo:131610385 382.489