Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03738 ATGAAAAGGATGAGCAACGAGAGTAACCTGCAAGTGACTTTCTCAAAACGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAACTTTGCACCCTATGTGATGTAGAAATTGCTCTTGTTGTATTCTCACCAACTGAAAAGGTATTTTCTTTTGGTCACCCTAATATTGATTTAGTCATAGATCGATATCTCTCTCGAGTTCCACCCGAAAACAATGACATCATGCAATTTATTGAAGCTCGTCGTAGAGCTAACGCGTGTGATCTCAATGCTAAGCTGGCTCAAATTAACAACACACTAGATGTTGAAAAAAGTCTTGGTGTTGAATTAAGCCATATGTGCAAAGCGGCTAAGGCTCAATTTTGGGGGACTTGTTCAATTGATAGGATGAATTGGGCTCAACTTGAAATATTCAAGAAGGCTTTGGAGGAGCTTAAGAATCTTGTTTCACAACAAGCTAATTGGCTTGTAATTCATGATACTTCTACTCAAATTCTTCCATTTTATGTTGATAATGCTTCATCCTCTAGCATCCCTTTCCAACACCAGCTAATTCCTCAACAAGGTCAAATGTTTTCATCACAATTTTTTCAGAACCACGTGTTGCATCCTTAG 612 0.3873 MKRMSNESNLQVTFSKRRSGLFKKASELCTLCDVEIALVVFSPTEKVFSFGHPNIDLVIDRYLSRVPPENNDIMQFIEARRRANACDLNAKLAQINNTLDVEKSLGVELSHMCKAAKAQFWGTCSIDRMNWAQLEIFKKALEELKNLVSQQANWLVIHDTSTQILPFYVDNASSSSIPFQHQLIPQQGQMFSSQFFQNHVLHP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03738 203 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Vivi1g03738 203 FunFam Agamous-like MADS-box protein AGL62 6 72 - -
Vivi1g03738 203 PANTHER MADS BOX PROTEIN 1 150 - -
Vivi1g03738 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Vivi1g03738 203 Gene3D - 6 74 IPR036879 GO:0003677|GO:0046983
Vivi1g03738 203 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Vivi1g03738 203 CDD MADS_MEF2_like 1 63 IPR033896 GO:0000977|GO:0045944
Vivi1g03738 203 Gene3D - 75 163 - -
Vivi1g03738 203 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Vivi1g03738 203 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Vivi1g03738 203 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03738 Vivi-Chr1 79799116 79799727 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03738 1 176 Type I MADS-box Gene Family AT5G60440 47.486 4.00e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g03738 SRF-TF 5.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03738 - - vvo:131610385 355.14