Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03718 ATGGCTTCACGCAGACTCGTATCGTCTCTGATTCGATCTTCTCTTCGTCGATCCTCGTCGAAACCCTCAATCTCCGCCTCAACATCGAGGCTCACTTCTCAATCCCGTGGTTCTCCTTGCGGCTACCTTCTTAATCGCGTAGCCGATTACGCCACTTCCGCCGCAGCTGCTGCCGCTCCTCCATCTCCGCCTCCAGCGAAAAAGGAGGTTCCTGGTGGTGGTAAAATCACCGATGAGTTCACTGGTAAGGGTGCGATCGGGCATGTTTGTCAGGTTATTGGTGCCGTCGTCGATGTCAGATTCGAGGAGGGTTTGCCTCCGATCTTGACTGCTCTTGAGCTTTTGGATCATGAGACACGGTTGGTGTTGGAAGTTGCGCAGCATTTGGGGGAGGGCGTTGTCAGAACTATTGCTATGGATGCTACTGAAGGTGTCGTTAGAGGGTGGCGTGTGCTCAACACTGGATCCCCTATCAGTGTTCCTGTCGGTAGGGCAACCCTTGGACGTATCATGAATGTTATTGGAGAGCCTATTGACGAGAAGGGTGAATTGAAAACTGAGCATTTTTTGCCAATCCATAGAGAAGCCCCCGCTTTTGTTGAGCAAGCAACTGAGCAGGAGATTCTTGTTACTGGTATCAAGGTTGTTGATTTGCTTGCACCATACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATCAACAATGTTGCTAAGGCTCATGGTGGTTTCTCTGTTTTTGCTGGTGTTGGAGAAAGAACCCGAGAGGGTAATGATTTGTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGTGATAAACAGAGCGAAAGCAAATGTGCTCTTGTGTATGGTCAAATGAACGAACCCCCTGGTGCCCGTGCCCGTGTTGGTCTTACTGGACTTACTGTTGCTGAGCACTTCCGTGACGCCGAAGGGCAAGATGTGCTTCTTTTTGTCGACAACATTTTCCGTTTTACTCAAGCTAACTCAGAGGTGTCTGCTTTACTTGGTCGTATCCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGGTCTTCAGGAGCGTATTACAACCACCAAAAAGGGTTCAATTACCTCTGTCCAAGCTATCTACGTGCCTGCTGATGATTTGACAGATCCTGCTCCTGCCACAACCTTTGCTCACTTGGATGCCACAACAGTGTTGTCACGACAGATCTCTGAGCTTGGTATCTATCCTGCTGTCGATCCATTGGATTCTACATCTCGTATGCTTTCCCCACTTATTTTGGGGGAGGCCCACTATGAAACCGCTCGTGGTGTACAGAAAGTACTTCAAAACTACAAGAATCTTCAAGATATCATTGCAATTTTGGGAATGGATGAGCTCAGTGAGGACGATAAATTGACTGTTGCCCGTGCTCGTAAGATTCAGCGATTCTTGAGCCAGCCTTTCCATGTTGCAGAAGTCTTCACTGGTGCCCCTGGCAAATATGTTGACTTGAAGGAGAACATTACTAGTTTCCAGGGTGTGTTGGATGGCAAGTACGATGACCTCTCAGAGCAGTCATTTTACATGGTTGGTGGTATTGAAGAAGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCAGCATCTTCATCTTAA 1683 0.4765 MASRRLVSSLIRSSLRRSSSKPSISASTSRLTSQSRGSPCGYLLNRVADYATSAAAAAAPPSPPPAKKEVPGGGKITDEFTGKGAIGHVCQVIGAVVDVRFEEGLPPILTALELLDHETRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPISVPVGRATLGRIMNVIGEPIDEKGELKTEHFLPIHREAPAFVEQATEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEAHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKENITSFQGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKIAKESAASSS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03718 560 FunFam ATP synthase subunit beta 1 50 - -
Vivi1g03718 560 Gene3D - 75 157 - -
Vivi1g03718 560 MobiDBLite consensus disorder prediction 1 39 - -
Vivi1g03718 560 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 436 552 - -
Vivi1g03718 560 SMART AAA_5 224 496 IPR003593 GO:0016887
Vivi1g03718 560 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 83 157 IPR036121 GO:0046034|GO:1902600
Vivi1g03718 560 Gene3D ATP synthase, F1 beta subunit 1 50 IPR042079 -
Vivi1g03718 560 PIRSF ATPase_subunit_beta 3 557 - -
Vivi1g03718 560 NCBIfam F0F1 ATP synthase subunit beta 86 551 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vivi1g03718 560 MobiDBLite consensus disorder prediction 55 76 - -
Vivi1g03718 560 Gene3D - 436 558 IPR024034 -
Vivi1g03718 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 439 IPR027417 -
Vivi1g03718 560 FunFam ATP synthase subunit beta 436 555 - -
Vivi1g03718 560 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 212 433 IPR000194 GO:0005524
Vivi1g03718 560 CDD ATP-synt_F1_beta_N 85 158 - -
Vivi1g03718 560 Gene3D - 158 435 IPR027417 -
Vivi1g03718 560 Pfam ATP synthase F1 beta subunit 1 46 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Vivi1g03718 560 CDD F1-ATPase_beta_CD 159 438 - -
Vivi1g03718 560 FunFam ATP synthase subunit beta 158 435 - -
Vivi1g03718 560 Pfam ATP synthase alpha/beta family, beta-barrel domain 89 155 IPR004100 GO:0046034|GO:1902600
Vivi1g03718 560 CDD ATP-synt_F1_beta_C 440 547 - -
Vivi1g03718 560 ProSitePatterns ATP synthase alpha and beta subunits signature. 424 433 IPR020003 GO:0005524
Vivi1g03718 560 Hamap ATP synthase subunit beta [atpB]. 84 551 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vivi1g03718 560 FunFam ATP synthase subunit beta 75 157 - -
Vivi1g03718 560 PANTHER ATP SYNTHASE 69 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03718 Vivi-Chr1 79469566 79473377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03718 122 494 Primary Pumps ATPases(2) AT1G20260 28.212 5.22e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03718 K02133 - gmx:100789705 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03718 1 79469566 79473377 Vivi1g03718 1 79469566 79473377 ECH