Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03717 ATGGCTTCACGGAGAATCGTTTCGTCTTTGATACGATCTTCCCTCCGTCCATCTCCATCCAAATCCTCCATCACCGCTTCAACATCCAGACTCCGTGCTTCTCCTTCCCCTTCCGCTTACTTTCTCAACCGTGCGACTGAGTATGCCACCGCCGCTGCCGCTGCAGCTCCCGCTCCTCCTCCGGCTAGGAAAATTCCCGCTGCTGATGGAAAGATTACTGATGAACGTACAGGGAAAGGTGCCATTGGACATATTTGTGCAATCATTGGTGCTGTGGTGGATGTGAGATTCGAAGATGGAGTGCCTCCGATCCTTACTGCGCTTGAGGTTCTTGAAGGCTCTACACGGATCGTGTTGGAGGTTGCTCAACATTTAGGCCAGGGTGTTGTTAGAACTATTGCTATGGAGGCTACTGAAGGTGCTGTTAGAGGATGGCGCGTGCTCAATACCGGTTCTCCCATCAATGTTCCTGTTGGCAGGGCTACCCTTGGACGTATCATGAATGTTATCGGAGAGCCTATCGACCAGAAAGGCGATTTCAAAACCGAGCATTATTTGCCCATTCATAGAGAGGCTCCTGCTTTTGTTGAGCAAGCAACTGAGCAGCAGATCCTTGTTACTGGTATCAAGGTTGTTGATCTGCTTGCACCATACCAAAGAGGAGGAAAGATCGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATCAACAATGTTGCTAAGGCTCATGGTGGTTTCTCTGTTTTCGCCGGTGTTGGAGAAAGAACCCGAGAGGGAAATGATTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGTTGGATGATAAGCAGAGTGAAAGCAAATGTGCTCTTGTGTATGGTCAAATGAACGAGCCACCTGGTTCTCGTGCCCGTGTTGGACTCACTGGGCTCACTGTCGCTGAACACTTCCGTGATGCTGAAGGACAAGATGTCCTTCTTTTCATCGACAACATTTTCCGCTTTACTCAAGCAAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGATCTTCAAGAGCGTATTACAACCACCAAAAAGGGTTCAATTACCTCTGTCCAAGCTATCTACGTGCCTGCTGATGATTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCATTTGGATGCTACAACAGTGTTGTCAAGACAGATCTCTGAGCTTGGTATCTATCCGGCTGTTGACCCGTTGGATTCCACATCTCGTATGCTTTCCCCACTTATTTTGGGCGAGTCACACTACGAAACCGCCCGTGGTGTACAGAAAGTACTTCAAAACTACAAGAATCTCCAAGATATCATTGCAATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAACTAACTGTCGCCCGTGCTCGTAAAATTCAGCGATTCTTGAGCCAGCCTTTCCATGTGGCAGAAGTTTTCACTGGTGCCCCTGGCAAATACGTTGACTTGAAGGAGAACATTGCTAGTTTCCAGGGTGTGTTGGATGGAAAATACGACGCCCTTTCAGAGCAGGCATTTTACATGGTTGGTGGCATTGAAGAGGTCATTGCAAAGGGAGAGAAGATTGCAAAAGAAAATGCCACATCTTAA 1665 0.4733 MASRRIVSSLIRSSLRPSPSKSSITASTSRLRASPSPSAYFLNRATEYATAAAAAAPAPPPARKIPAADGKITDERTGKGAIGHICAIIGAVVDVRFEDGVPPILTALEVLEGSTRIVLEVAQHLGQGVVRTIAMEATEGAVRGWRVLNTGSPINVPVGRATLGRIMNVIGEPIDQKGDFKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLDDKQSESKCALVYGQMNEPPGSRARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGDLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGESHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKENIASFQGVLDGKYDALSEQAFYMVGGIEEVIAKGEKIAKENATS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03717 554 CDD F1-ATPase_beta_CD 155 434 - -
Vivi1g03717 554 Pfam ATP synthase alpha/beta family, beta-barrel domain 85 151 IPR004100 GO:0046034|GO:1902600
Vivi1g03717 554 FunFam ATP synthase subunit beta 432 551 - -
Vivi1g03717 554 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 79 153 IPR036121 GO:0046034|GO:1902600
Vivi1g03717 554 Gene3D - 70 153 - -
Vivi1g03717 554 CDD ATP-synt_F1_beta_C 436 543 - -
Vivi1g03717 554 Gene3D ATP synthase, F1 beta subunit 1 48 IPR042079 -
Vivi1g03717 554 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 208 429 IPR000194 GO:0005524
Vivi1g03717 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 435 IPR027417 -
Vivi1g03717 554 ProSitePatterns ATP synthase alpha and beta subunits signature. 420 429 IPR020003 GO:0005524
Vivi1g03717 554 PIRSF ATPase_subunit_beta 2 553 - -
Vivi1g03717 554 NCBIfam F0F1 ATP synthase subunit beta 82 546 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vivi1g03717 554 FunFam ATP synthase subunit beta 71 153 - -
Vivi1g03717 554 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 432 548 - -
Vivi1g03717 554 PANTHER ATP SYNTHASE 71 550 - -
Vivi1g03717 554 Gene3D - 432 552 IPR024034 -
Vivi1g03717 554 SMART AAA_5 220 492 IPR003593 GO:0016887
Vivi1g03717 554 FunFam ATP synthase subunit beta 154 431 - -
Vivi1g03717 554 Pfam ATP synthase F1 beta subunit 1 44 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Vivi1g03717 554 CDD ATP-synt_F1_beta_N 81 154 - -
Vivi1g03717 554 Gene3D - 154 431 IPR027417 -
Vivi1g03717 554 MobiDBLite consensus disorder prediction 1 35 - -
Vivi1g03717 554 Hamap ATP synthase subunit beta [atpB]. 80 547 IPR005722 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03717 Vivi-Chr1 79466491 79469069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03717 112 490 Primary Pumps ATPases(2) AT1G20260 28.642 2.20e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03717 K02133 - gmx:100797948 904.82