Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03681 ATGTATAACAAGGAGGTCTGTTCTCCCTTATCTCAAAGCAGATTCGGCGTCGGCATCAACACCGCCGGCCACATGCAGTTGGACGCCGGCGCGTTCGCTTCGTTGTACTCCGCTCTGACTAACAGTAGTGAGAATCTTCCGTCACTCTCCGGGAACTACAACAACGGCGGCGGCGTTTCACTTTATCCGTACTCTGACTCTGAAACTGAGTACGACTCGTTCGTGATACAGAAGCATCAGGATATGGTGAATCGTCACAGTATGTGTCTCAGTCGCCTCATGGAAGCTTCCAATGAGGTTAAAGCTCTGCAGCAAGAGAACGAAGAGCTCCGTGCCTTGAGCAAAGAGTTGCAGAAGAATCTGAACCTCCTAGTTCAGGCTTCTTTGGAGAACCGATTTGGCCGTGGCGGATCCTCCGTTCCGACACTATCAATTCCGTTTGATGTATTGCACAGTGCCCGTGGCTTGAATCTTGGAGATGGAAAAGAAAACTGTGCTGGTTACAATAATAATAACATCAATAATAATAATAAAGAGCTGCAGGAAGATTCGGATGAGAGTTCAGAGAGTGTGATAGACGATAACGATGTTGATGATGAAGCGGAACGGTTCTCGCTGCCGAAGAGCATATCTGTGAGATCCAAGGGCTACGTGAAGATGGCTCAGCCTCCAGCCGTCGTAACTAACAATAATGCTTGTCGTAGCACCAAGGGCGCTACCCGCTCTCGTGCGTCTTCTACTCAACCAGATCAAGCTCAAAAGGTATATGTGCAAGGAGGGCAGAAAGAGGAAGAACCTCTTGAGATGACTGTGTATAATCAGGGGATGTTAAAGACTGAGCTGTGTAACAAATGGCAGGAAACAGGCACATGCCCTTATACTGACCATTGTCAATTCGCTCATGGTATTGAGGAGCTTCGCCCGGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGTAGGATGGTTTTTGCTGGGGTTGTCTGCCCGTATGGACATAGATGCCATTTCCGTCATGCACTTACTGAGGAAGAGAAAGCTATCTCACAATCTATGCCCAAATCAGTGAAGCTGGAAAGATAA 1083 0.482 MYNKEVCSPLSQSRFGVGINTAGHMQLDAGAFASLYSALTNSSENLPSLSGNYNNGGGVSLYPYSDSETEYDSFVIQKHQDMVNRHSMCLSRLMEASNEVKALQQENEELRALSKELQKNLNLLVQASLENRFGRGGSSVPTLSIPFDVLHSARGLNLGDGKENCAGYNNNNINNNNKELQEDSDESSESVIDDNDVDDEAERFSLPKSISVRSKGYVKMAQPPAVVTNNNACRSTKGATRSRASSTQPDQAQKVYVQGGQKEEEPLEMTVYNQGMLKTELCNKWQETGTCPYTDHCQFAHGIEELRPVIRHPRYKTEVCRMVFAGVVCPYGHRCHFRHALTEEEKAISQSMPKSVKLER 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03681 360 MobiDBLite consensus disorder prediction 186 200 - -
Vivi1g03681 360 Coils Coil 170 190 - -
Vivi1g03681 360 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Vivi1g03681 360 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Vivi1g03681 360 SUPERFAMILY CCCH zinc finger 311 341 IPR036855 GO:0046872
Vivi1g03681 360 Gene3D - 310 346 - -
Vivi1g03681 360 Gene3D - 270 309 - -
Vivi1g03681 360 SUPERFAMILY CCCH zinc finger 273 308 IPR036855 GO:0046872
Vivi1g03681 360 FunFam zinc finger CCCH domain-containing protein 15-like 270 309 - -
Vivi1g03681 360 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Vivi1g03681 360 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Vivi1g03681 360 FunFam Zinc finger protein 36, C3H1 type-like 1 310 346 - -
Vivi1g03681 360 MobiDBLite consensus disorder prediction 228 252 - -
Vivi1g03681 360 MobiDBLite consensus disorder prediction 169 204 - -
Vivi1g03681 360 Coils Coil 93 127 - -
Vivi1g03681 360 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 302 IPR000571 GO:0046872
Vivi1g03681 360 PANTHER CCCH ZINC FINGER/TIS11-RELATED 79 350 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03681 Vivi-Chr1 78756058 78758666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03681 64 355 C3H Transcription Factor Family AT1G68200 46.602 8.42e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g03681 zf-CCCH 1.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03681 K18753 - gmx:100796550 440.269