Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03661 ATGTTCCCTTTTCTCTTCCTCCATCTTCTTCTCTTCTGCAACACTTTCACACCTCAAGTAAACTCTCTAAACCCTGAAGGCTATGTCCTCTTAACACTCAAACAATTCATCACCGACCCACAAGGCTCCATGAACAACTGGAACTCTTCTGATCAAAACCCATGTTCATGGAACGGAATCACCTGCAAAGACCAAACCGTTGTTTCCATCAGTATCCCAAAAAGGAAACTTCACGGTTCTCTTCCTCCTTCTCTAGGATCTCTTTCAAATCTTCGTCATCTCAACTTCAGAAACAATCAACTCTTTGGTGCTTTACCTCGAGAGCTTTTTCAAGCCACAGGTCTTCAAAGTTTGGTGCTTTATGGAAATTCCTTTTCTGGGTCTGTTCCAAATGAGATTCAGAATCTTAAGTACCTTCAAACTCTTGATTTGTCTCAGAATTTCTTTAACGGGTCATTGCCTGATTCAGTTCTTGAATGTAAGAGACTTAAAGCTCTTGTTTTGAGTAGAAACAATTTTACTGGCTTTTTGCCTAATGGATTTGGTGCTGGTTTGTCTTCTCTTGAGAAGCTTGATCTTTCTTTCAATGATTTTCATGGTTTGATTCCTAGTGACATTGGAAAATTGTCGAGTTTGCAAGGAAATCTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCTAGTCTTGGAAATTTGCCTGAGAAGGTTTATATTGATCTTACATACAATAATTTGAGTGGTTCAATACCACAAACCGGTGCTTTGATGAATAGAGGACCAACTGCTTTTATTGGAAACCCTGGCTTATGTGGCCCACCTTTGAAGAATCCATGTGGCTCTGATGTTCCTGTTCCAGTTCCAGCTACTAGTTCACCTTCCTCAAATCCAAACCTTCCTGGTTCGGTGAAAAACAAGGGGCTGAGTAAAGGTGCTGTGGTTGGGATTGTTGTTGGTGATTTAATAGGAATTTGTCTGTTAGGTTTGTTGTTCTCGTTCTTTTACTCGAGGGTTTGCGGTTTTAATCAGGATCAGGATGAAGATGATGTTAACAAGGGAATGAAAAGAGGGAAAGAGTGTTTTTGTTTCAGAAAAGATGGATCTGAGGCACTATCTGATAATGTTGAGCAATATGATCTTGTTCCATTAGATTCACAAGTTGCTTTTGATTTGGACGAGCTTCTTAAGGCTTCGGCTTTCGTTCTTGGTAAGAGTGGAATAGGGATTATGTACAAAGTTGTGCTTGAAGAAGGGCTTGCTTTGGCTGTGAGAAGATTGGGGGAAGGTGGTTCTCAAAGGTTTAAAGAGTTTCAAACGGAAGTTGAAGCTATAGGGAAGTTGAGACATCCAAATGTTGCTACTCTTAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGACTATGTTCCAAATGGAAGCCTTGCTACAGCAATTCATGGGAAGGTTGGACTTGCCACATTTGTGCCGCTATCTTGGTCGGATCGGTTCAAAATCATGAAAGGAACAGCAAAAGGAGTGGTCTATCTGCATGAATTCAGCCCTAAGAAGTATGTACATGGAGATCTAAAGCCAAGTAACATACTTCTTGGACATGACATGACACCCTACATTACCGATTTCGGACTAGGCCGTCTCGCAAACATCGCGGGCGCTTCCCCGACCCTTCAATCAAACCGAGTGGCTGCAGAAAAACTGCAAGAAAGACAGAAGAGTCTGTCCAATGAAGTCGCAACAAATATTTTAGGAAACGGCTATCAAGCTCCAGAAGCCTTAAAAGTAGTGAAACCGTCGCAGAAATGGGATGTTTATTCATACGGCGTGATTTTGTTAGAAATGATCACAGGAAGATTACCTATTGTTCAAGTAGGTAACACAGAAATGAACCTTGTTCAGTGGATTCAGTTCTGCATCGAAGAGAAGAAGCCACTCTCGGATGTTTTAGATCCATATTTGGCCGAAGACGCCGACAAAGAGGAAGAGATAATCGAAGTTTTGAAGATCGCTATGGCTTGTGTTAATAGCAGCACTGAAAAAAGACCTACAATGAGGCATGTACTTGATGCTTTGGATAGATTGTCTGTTTCATCTGATTGA 2106 0.4098 MFPFLFLHLLLFCNTFTPQVNSLNPEGYVLLTLKQFITDPQGSMNNWNSSDQNPCSWNGITCKDQTVVSISIPKRKLHGSLPPSLGSLSNLRHLNFRNNQLFGALPRELFQATGLQSLVLYGNSFSGSVPNEIQNLKYLQTLDLSQNFFNGSLPDSVLECKRLKALVLSRNNFTGFLPNGFGAGLSSLEKLDLSFNDFHGLIPSDIGKLSSLQGNLDLSHNHFSGSIPASLGNLPEKVYIDLTYNNLSGSIPQTGALMNRGPTAFIGNPGLCGPPLKNPCGSDVPVPVPATSSPSSNPNLPGSVKNKGLSKGAVVGIVVGDLIGICLLGLLFSFFYSRVCGFNQDQDEDDVNKGMKRGKECFCFRKDGSEALSDNVEQYDLVPLDSQVAFDLDELLKASAFVLGKSGIGIMYKVVLEEGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNVATLRAYYWSVDEKLLIYDYVPNGSLATAIHGKVGLATFVPLSWSDRFKIMKGTAKGVVYLHEFSPKKYVHGDLKPSNILLGHDMTPYITDFGLGRLANIAGASPTLQSNRVAAEKLQERQKSLSNEVATNILGNGYQAPEALKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGNTEMNLVQWIQFCIEEKKPLSDVLDPYLAEDADKEEEIIEVLKIAMACVNSSTEKRPTMRHVLDALDRLSVSSD 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03661 701 SMART serkin_6 402 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03661 701 Gene3D Transferase(Phosphotransferase) domain 1 473 701 - -
Vivi1g03661 701 Gene3D Ribonuclease Inhibitor 76 283 IPR032675 -
Vivi1g03661 701 Gene3D Ribonuclease Inhibitor 16 75 IPR032675 -
Vivi1g03661 701 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
Vivi1g03661 701 CDD STKc_IRAK 403 696 - -
Vivi1g03661 701 Gene3D Phosphorylase Kinase; domain 1 369 472 - -
Vivi1g03661 701 Pfam Protein kinase domain 403 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03661 701 ProSiteProfiles Protein kinase domain profile. 397 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03661 701 Pfam Leucine Rich Repeat 90 108 IPR001611 GO:0005515
Vivi1g03661 701 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 183 - -
Vivi1g03661 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Vivi1g03661 701 Coils Coil 559 579 - -
Vivi1g03661 701 FunFam Leucine-rich repeat receptor-like protein kinase 187 282 - -
Vivi1g03661 701 FunFam Leucine-rich repeat protein kinase family protein 473 699 - -
Vivi1g03661 701 Pfam Leucine rich repeat 139 198 IPR001611 GO:0005515
Vivi1g03661 701 SUPERFAMILY L domain-like 25 277 - -
Vivi1g03661 701 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 160 697 IPR046959 -
Vivi1g03661 701 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Vivi1g03661 701 SMART LRR_typ_2 185 208 IPR003591 -
Vivi1g03661 701 SMART LRR_typ_2 136 160 IPR003591 -
Vivi1g03661 701 SMART LRR_typ_2 88 112 IPR003591 -
Vivi1g03661 701 SMART LRR_typ_2 209 234 IPR003591 -
Vivi1g03661 701 FunFam Leucine-rich repeat receptor-like protein kinase 380 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03661 Vivi-Chr1 78493355 78495936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03661 1 701 Receptor kinase-like Gene Family AT2G01210 65.738 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi1g03661 Pkinase 1.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03661 - - gmx:100792873 1107.82