Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03652 ATGGCTTCAAGGTCATATTCCAATTTGTTAGATCTTACTTCATGTGGCTCGCCGTCGTCTTTCGGTCGGGAGAAGAAGAGGCTTCCTAGAGTTGCAACTGTTGCTGGAGTGTTGTCTGAGTTAGATGATGAAACAAATACCAGTGTTGGCTCTGATGCTCCTTCTTCTGTTTGTCAAGAAAGGATGATTATTGTTGGTAACCAGCTTCCTTTGAAGGCGCAAAGGAAAGAGGAGAATGGTAAGTGGGAGTTTACTTGGGATGAGGATTCACTTCTTTTACAGCTGAAAGATGGTCTTGGTGATGATGTCGAAACGATCTATATCGGTTGTCTTAAAGAAGAGATTGATCCAATTGAGCAAGATGATGTTGCTCAGTACTTGCTTGATAATTTCAAGTGTGTACCGACTTTTCTCCCTCCTGAGCTTTTTACTAAATTCTATCATGGTTTTTGTAAGCAGCATCTTTGGCCTTTGTTTCATTACATGCTTCCGCTTTCGCCTGATCTTGGTGGTCGATTCGATCGATCCCTTTGGCAGGCTTATGTTTCTGTCAACAAGATTTTTGCTGATAAAGTGATGGAAGTCATTAACCCTGATGAGGACTTTGTTTGGGTTCATGACTACCACTTGATGGTTCTACCAACTTTTTTGAGAAAGAGATTTAACCGGGCGAGGTTAGGATTCTTTCTTCATAGTCCTTTTCCGTCTTCTGAGATATACCGAACGCTTCCGGTTAGGGATGAACTTCTTAGAGCCCTTCTGAATTCTGACCTTATAGGGTTTCATACTTTTGACTATGCTAGACATTTTCTCTCCTGCTGCAGTAGAATGCTAGGGATTGCTTATCAATCCAAGCGAGGATATATCGGTCTTGAGTACTATGGAAGAACTGTTAGCATTAAGATTCTTCCGGTTGGTATTCATATAGGTCAGCTTGAATCAGTCATGAATCTTTCCGAGACAGAAAGCAAGGTTGCCGAGTTAAGAAATCGATTCAAAGGTCAAACTGTTATGCTTGGGGTAGATGACATGGATATCTTCAAAGGAATCAGCTTAAAACTTCTGGCCATGGAACAACTGCTTTTACAACATGCTGATAAGAGAGGAAAAGTTGTTCTGGTTCAAATCGCAAACCCTGCTAGAGGCCGCGGAAAGGATGTGCAAGAAGTGCAGTGTGAAACTTATGCAACAGTGAAAAGGATAAATGACACATTCGGAAGGCCTGGATACACACCCGTCATCTTGATCGATACAACACTCCAGAGTTACGAGCGGATAGCTTATTATGCAATTGCGGAATGCTGTCTTGTTACAGCTGTAAGAGATGGGATGAACCTTATACCCTATGAGTATATCATTTGTAGACAAGGAAATGAGAAAATAGACGAGATCTTAGGAATAAGCTCGACTATCCATAAGAAGAGTATGTTGGTGGTGTCTGAGTTCATCGGTTGCTCTCCATCGTTAAGCGGCGCAATTCGTGTGAATCCATGGAATATTGATGCTGTTGCTGAAGCTATGGATTCTGCATTAATGGTCCCGGAGTCTGAAAAACAAATGAGGCACGAGAAACATTATAGGTACGTTAGTACACACGATGTTGCATATTGGGCTCGTAGCTTCTTGCAGGACCTTGAAAGAGCTTGTAGGGATCATCTGAGAAGGAGATGCTGGGGGATTGGCTTTGGTTTAGGATTTCGAGTAATTGCTTTGGATCCAAACTTTAGAAAACTATCCGTGGAACATATTGCTTCAGCTTATAAAAGGACAAAGCACCGAGCAATTCTTTTGGATTACGATAGTACTATGGTGCAGCCTGGATCAATTAGTACAACACCTAATGCTGAATCTGTCGGCATCTTGAACAGCTTGTGCAGTGACACCAAGAATTGTGTTTTCCTTGTAAGTGGAAAGGAGAGAAAGACTCTTACCGAATGGTTTTCTTCCTGCGAGAAACTCGGACTCGCTGCAGAACACGGCTATTTCGTGAGGACAAGTCATACTGAAGAATGGGAAGCTTGTGTTTCTGTGCCTGATTTCGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATACAGAAACTACTGATGGTTCTAACATAGAGTCCAAAGAGAGTGCTCTTGTTTGGAATTACGAATTTGCAGACCGAGATTTCGGTTCATGCCAAGCTAAGGAGCTTCTTGATCATCTAGAAAGTGTTCTCGCCAATGAGCCTGTTTCAGTTAAAAGTGGCCCAAACATTGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGTATTGTAGCGGAACGTCTTCTGATAACAATGCAACAAAAGGGAGTGATTCCGGATTTTGTTCTATGCATTGGTGATGACAGATCGGACGAAGACATGTTTGGAGTAATAACAAGTGCAAGGGCATCGCTATCGCCTATTGCTGACGTGTTTCCTTGTACTGTTGGTCAGAAACCAAGCAAGGCAAAGTATTACTTGGAAGACACAAGTGAGATTATGAGGATGTTGCAGGGACTTGCCAATGCTTCTGAGCAAAGTGCTGCTAGAAGTCCTTCCCAGTTTGCTCACAATTAA 2571 0.4243 MASRSYSNLLDLTSCGSPSSFGREKKRLPRVATVAGVLSELDDETNTSVGSDAPSSVCQERMIIVGNQLPLKAQRKEENGKWEFTWDEDSLLLQLKDGLGDDVETIYIGCLKEEIDPIEQDDVAQYLLDNFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVINPDEDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGIAYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLESVMNLSETESKVAELRNRFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHADKRGKVVLVQIANPARGRGKDVQEVQCETYATVKRINDTFGRPGYTPVILIDTTLQSYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKIDEILGISSTIHKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVPESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIASAYKRTKHRAILLDYDSTMVQPGSISTTPNAESVGILNSLCSDTKNCVFLVSGKERKTLTEWFSSCEKLGLAAEHGYFVRTSHTEEWEACVSVPDFDWKQIAEPVMQLYTETTDGSNIESKESALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSGPNIVEVKPQGVSKGIVAERLLITMQQKGVIPDFVLCIGDDRSDEDMFGVITSARASLSPIADVFPCTVGQKPSKAKYYLEDTSEIMRMLQGLANASEQSAARSPSQFAHN 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03652 856 Gene3D Glycogen Phosphorylase B; 315 530 - -
Vivi1g03652 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 313 - -
Vivi1g03652 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 550 - -
Vivi1g03652 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 48 840 IPR001830 GO:0003824|GO:0005992
Vivi1g03652 856 CDD GT20_TPS 61 546 IPR001830 GO:0003824|GO:0005992
Vivi1g03652 856 Pfam Trehalose-phosphatase 596 829 IPR003337 GO:0003824|GO:0005992
Vivi1g03652 856 NCBIfam trehalose-phosphatase 591 839 IPR003337 GO:0003824|GO:0005992
Vivi1g03652 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 722 851 - -
Vivi1g03652 856 FunFam Alpha,alpha-trehalose-phosphate synthase 315 530 - -
Vivi1g03652 856 Gene3D Glycogen Phosphorylase B; 55 314 - -
Vivi1g03652 856 SUPERFAMILY HAD-like 593 839 IPR036412 -
Vivi1g03652 856 Gene3D - 718 854 IPR023214 -
Vivi1g03652 856 Gene3D - 592 703 IPR023214 -
Vivi1g03652 856 CDD HAD_TPP 594 833 - -
Vivi1g03652 856 Pfam Glycosyltransferase family 20 61 546 IPR001830 GO:0003824|GO:0005992
Vivi1g03652 856 NCBIfam HAD-IIB family hydrolase 595 795 IPR006379 -
Vivi1g03652 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 592 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03652 Vivi-Chr1 78377203 78380938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03652 1 839 Trehalose Biosynthesis Gene Families AT4G17770 78.741 0.0 1409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03652 K16055 - gmx:100782799 1546.18