Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03643 ATGACTCTTGTTCATTTGTTCTGCTTCCTCTTGTTTTGTCACCTCGTGTTGATTTTATCAGAAGGGTATGGAAGTGGGTACCAGGATAACTGTCCACACTCATTCAGCTGTGGAATTCGTGGGAATTTTAGTTATCCTTTCACCAAGGCAGAGAAACCAGACTGCGGCCTCATACTCATACATAGCTGTGACGCCGGTTACTATTCACCCAAATTGATTCAACTGGAGGAGAATGCAAGAACCACAGAGCTAACTGGCTCCATTGACCAGAATACCATTACACTTTCTGATCAAGATTTTTACAAGCATTTACAAAATAATGCTTGTGATGCTTTGAACCACAACTACACTCTTCCTCCCCCTTCTCCTTTGGTTTCCTTTTATATAATTTATAATGTAACTTTCTTCCGATGCAACCACGGCCACAAAATCAACCCCCCTGCACATTATTTTAAACACAACTGTTCATCCTATGATATATATTATGACAGCAACCAATACCCCAATGTTACTATAGAGATGGCACGTAGCTTTTTCCCATCCTGCATGGTTCTTCAGTTTCCATCTAAAGACTTGACTGATACCAAAAACATTTTATCATTTGTATCTGGTCAGGTGAGTGTTAAAATAGAACTATCTGCTGATTGTGACAAGTGCTGCAACCACGGAGGACAATGTCGACTTGATGCAAGCAAGAAGTTTTACTGTCATAATGAGCCAGAGAATAAGAGAGATTATTTTAAGCTTCTACTTGGACTTGGAATAGGTTTAGGTTTTACATTGGTTGCACTGGGTATTCTTATAGCTCGATGCCACTCCAAAAGAAAACATGCTCCATCAGACCTCCAGAATCAATCGAGAATAAAATCATACAATGATGAAATTGATCCCTACCGAAATCAAGACTCAGAAAATGGCACTGTCTACTTTAAAATACCTCTGTTCTCTTATAAGGAGCTAGAAGAAGCTACAAATAATTTCCACCAAGCCAACCAACTTGGAAGTGGAGGCTTTGGAATAGTTTATTATGGGAGACTGCAAGATGGACGTGAAGTTGCTGTTAAGCGCCTATACCAACATAACTGGAGGCGAGTAGAACAGTTCACAAATGAAATTGAGATCCTTGCTCGTACTCGCCACGCTAATCTTGTGTCCCTCTATGGTTGTACTTCACATCACAGCGATGAACTACTGCTAGTGTACGAATATGTTCCAAACCACACTGTTGATTTTCATCTCCAAGGTGATCTAGCAAGAACAGCCACACTGCCTTGGCATATCAGGATGAAAATTGCCATAGAGACAGCAAGTTCATTGGCTTATCTGCATGCTTCAGGCATAATCCACCGTGACGTGAAAACCAAAAACCTTCTCCTTACAAACAGCTTCAGTGTAAAAGTTGCAGATTTTGGTCTTTCAAGGCTATTCCCCCATGATATCACCCATGCTTCCACGGCACCACAAGGGACACCAGGTTATGTTGACCCGGACTATCATCAATGCTACCAGCTTACTAACAAGAGTGATGTATATAGTTTTGGTGTTGTGCTCGTCGAGCTTATATCATCTAAGCTTGCTGTTGATATGAACAGACATAAGGATGAGATTAACTTGTCAAACCTGGCCTTAAAGAAGATCCAGAAGGGTGAATTTACTGAGCTGGTGGATCCTAATCTTGGTTTTGATTCAGACAACGAGGTTAAGAGGATGATAGTTTCGGTAGCAGAGTTGGCTTTTCAATGTTTGCAAAGGGAAAAGGAATTGAGACCTTCCATGGATGAGGTTTTGAAGGTGCTGATGAGAATTGAAAGTGGAAAGGATGAGCCTGAGCATATAGTTGAAGAAGATGCGCATCCATCCTCACCAGAAGGAAATGAGGATGAGATTGGACTTTTCCAAAAAACAATGCGACAGCCTTCGCCTAAAACTGTGGTTGATGGATGGGATAGTCGATCTACTACGTCAAATACCATCAGCGGTCATTAA 1986 0.4124 MTLVHLFCFLLFCHLVLILSEGYGSGYQDNCPHSFSCGIRGNFSYPFTKAEKPDCGLILIHSCDAGYYSPKLIQLEENARTTELTGSIDQNTITLSDQDFYKHLQNNACDALNHNYTLPPPSPLVSFYIIYNVTFFRCNHGHKINPPAHYFKHNCSSYDIYYDSNQYPNVTIEMARSFFPSCMVLQFPSKDLTDTKNILSFVSGQVSVKIELSADCDKCCNHGGQCRLDASKKFYCHNEPENKRDYFKLLLGLGIGLGFTLVALGILIARCHSKRKHAPSDLQNQSRIKSYNDEIDPYRNQDSENGTVYFKIPLFSYKELEEATNNFHQANQLGSGGFGIVYYGRLQDGREVAVKRLYQHNWRRVEQFTNEIEILARTRHANLVSLYGCTSHHSDELLLVYEYVPNHTVDFHLQGDLARTATLPWHIRMKIAIETASSLAYLHASGIIHRDVKTKNLLLTNSFSVKVADFGLSRLFPHDITHASTAPQGTPGYVDPDYHQCYQLTNKSDVYSFGVVLVELISSKLAVDMNRHKDEINLSNLALKKIQKGEFTELVDPNLGFDSDNEVKRMIVSVAELAFQCLQREKELRPSMDEVLKVLMRIESGKDEPEHIVEEDAHPSSPEGNEDEIGLFQKTMRQPSPKTVVDGWDSRSTTSNTISGH 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03643 661 FunFam Wall-associated receptor kinase-like 20 404 611 - -
Vivi1g03643 661 MobiDBLite consensus disorder prediction 607 623 - -
Vivi1g03643 661 SUPERFAMILY Protein kinase-like (PK-like) 306 600 IPR011009 -
Vivi1g03643 661 ProSiteProfiles Protein kinase domain profile. 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03643 661 Pfam Protein kinase domain 327 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03643 661 Gene3D Phosphorylase Kinase; domain 1 298 403 - -
Vivi1g03643 661 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Vivi1g03643 661 MobiDBLite consensus disorder prediction 607 661 - -
Vivi1g03643 661 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 653 IPR044652 GO:0004672
Vivi1g03643 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vivi1g03643 661 Gene3D Transferase(Phosphotransferase) domain 1 405 612 - -
Vivi1g03643 661 SMART serkin_6 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03643 661 MobiDBLite consensus disorder prediction 636 661 - -
Vivi1g03643 661 FunFam receptor-like protein kinase FERONIA 291 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03643 Vivi-Chr1 78170467 78174622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03643 35 657 Receptor kinase-like Gene Family AT1G25390 46.009 4.33e-163 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi1g03643 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03643 - - psat:127098519 1170.99