Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03640 ATGTATTGCAAAGTAACAAGTGTGGAACAAATTATGAAACACAATCATAGGTTCCTTATGTTGTCTCATTTAACTGTGCTACTGTTACTTGTCTTAACTATCAAAGGAAATGGACACAGTGATGATTGTCCAGAGTCATTTGATTGTGGAAATCTTGGGTTTATTGGCTACCCTTTTACCAAGTTTGGACTCTCAAACTGCGGTGCATTGGCAATTCAAGGTTGTGATGATCCTAACAAAAATGCAATGAAGACCATCCAATTAACCAAAGGAGGAAGACACTTTCAAGTTACAAAAATTGATAATACCTGGTCCAAGGGCAACCCTATTTCAATTATTGACCATAATTTCACCAAGCTTTTGACGAAAAGTGCTTGTGAAGTCTACAACTATGTTAATATTACCCTCCCTCCTCCCTCTCCTTTTGGAACTTCTTATATCAAAGACAATATAACTGCTTTCAAATGCAACCGTACCCAAAAACAAGTCACCAACCCTCCAAGTAATTTTTTAAAAAATAGTTCTTATCCGAACTATGATTTTTATTTCGGTGATTCAATATCCGATGGTGAGTCTAATCGCTCTTTCACGTCATGCTTGTTGTTTCATCTTCCTGTCATTGGATTAGGCTTTGCACTTTCTGGTAACCCGTATCCGTTATTAGCTCATGAAATTACCTATCAGTTTCAACTTTCTGAAGAGTGCATACAGTGTCACCGTGATACAAAAGGTCATTGTCGTGCTCACAACAACGGACAAATTTATTGCCCAGGGAAGGGTAGAAGTTCAAATTGGAAGCTCCGACTGGTTTTAGCTGTTGTGGTCGTGGTAGTTATTGGAGGTGGAGTGCTTATATTATTGGCATATTGCATTAAGAAAAAGATCGTCCCTGCAGCATTTCTTTTATTCAGGAAGAAGAGTTCAACCAATCAAATTATTGAGGATTTTTTGAAAGAACATGGACATCTTCCAGCTGCTAGGTATACTTATTCAGATGTCAAGAAAATAACAAACTCTTTTAGAAACAAATTAGGCCAAGGAGGGTTTGGAAGTGTATACAAAGGGAAGTTACGTGATGAACGCGATGTCGCAGTGAAGGTTTTAAGTGAATCAAAAGGTAATGGGGAAGATTTTATTAATGAAGTTGCAAGTATCAGTAGAACTTCGCATGTCAACATTGTTAGACTTTTGGGATTCTGTTTGGATGGTTCTAAAAAGGCACTAATATATGAATTCATGTCTAATGGATCTCTTGAGAAGTTCATATATGTGGAGAAAAATCCATTGAAGGGTGATCACCAATTGAATTGCAAAATACAGTATGATATTGCTGTTGGTGTTGCTCGGGGACTAGAGTACTTGCATAGAGGTTGCAACACCAGAATCTTACATTTCGACATAAAACCTCATAATATATTACTTGATGAGGATCTATGTCCGAAAATTTCAGATTTTGGACTTGCTAAAATATGTCTAAAAAATGAAAGCATTGTATCCGTATTTGGTGCAAGGGGAACACCCGGATATATTGCTCCAGAGTTGTTCTCTTAA 1551 0.372 MYCKVTSVEQIMKHNHRFLMLSHLTVLLLLVLTIKGNGHSDDCPESFDCGNLGFIGYPFTKFGLSNCGALAIQGCDDPNKNAMKTIQLTKGGRHFQVTKIDNTWSKGNPISIIDHNFTKLLTKSACEVYNYVNITLPPPSPFGTSYIKDNITAFKCNRTQKQVTNPPSNFLKNSSYPNYDFYFGDSISDGESNRSFTSCLLFHLPVIGLGFALSGNPYPLLAHEITYQFQLSEECIQCHRDTKGHCRAHNNGQIYCPGKGRSSNWKLRLVLAVVVVVVIGGGVLILLAYCIKKKIVPAAFLLFRKKSSTNQIIEDFLKEHGHLPAARYTYSDVKKITNSFRNKLGQGGFGSVYKGKLRDERDVAVKVLSESKGNGEDFINEVASISRTSHVNIVRLLGFCLDGSKKALIYEFMSNGSLEKFIYVEKNPLKGDHQLNCKIQYDIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDEDLCPKISDFGLAKICLKNESIVSVFGARGTPGYIAPELFS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03640 516 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Vivi1g03640 516 SMART serkin_6 338 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03640 516 PANTHER RUST RESISTANCE KINASE LR10-RELATED 310 516 IPR045874 GO:0004672
Vivi1g03640 516 ProSiteProfiles Protein kinase domain profile. 338 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03640 516 FunFam serine/threonine-protein kinase PBS1-like 306 412 - -
Vivi1g03640 516 SUPERFAMILY Protein kinase-like (PK-like) 321 515 IPR011009 -
Vivi1g03640 516 FunFam Os07g0541700 protein 413 506 - -
Vivi1g03640 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vivi1g03640 516 Pfam Protein kinase domain 342 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03640 516 Gene3D Transferase(Phosphotransferase) domain 1 413 516 - -
Vivi1g03640 516 Gene3D Phosphorylase Kinase; domain 1 314 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03640 Vivi-Chr1 78151969 78154421 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03640 280 516 Receptor kinase-like Gene Family AT4G18250 56.067 6.57e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi1g03640 Pkinase 5.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03640 - - vvo:131642943 1021.54