Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03634 ATGGCTTCAGTTAATTATCAACTTCTGTTCCTTCTGTTTTTACACCTCATGCTGCGTCTTGTGTTGGCGGGTGGATATGAGAATAAGTACGAAGGAGAGTGTCCAGGTTCATTTAGATGTGGATATCTTGGCAATATCAGTTTCCCTTTCACTACAACACAACACCGGGACTGTGGCTTGTTGCCAATATCTAATTGTGATGATGCTTCAATGAATCCCAAAATGATCCAATTTCAGAATAACGGGAAACAGTTTGATTTTGAGGTTGAATTTGTAAGTCCTACTAAGTATCACGGAGGTAACACTACTTGTAGTTGTGTTTTTAGAGACAAGAGTCTGCGCAAACTACTGCAAAACCAAAGTTGTGAAGCTCTCAGATATAATTACACTCTTCCTCCCACCCCTCACTTTGTTTCTTTTCATATGGAAACTTATACAACCTTGTTCATGTGCAACCGTATCCTCCATGTCAACCCTCCAACAGATATGCATAACTATACAAAGTGTCCTCCCAGTGATTTCTACTACCAGCCTCACATCTCTACTGATAAAGAGTCTTGGAGTGCTTTTACAGCATGCGCAAATGTCGGACTTCCTATTAAAGACGTCCCTGACTCTGACGACCCTTTTACTTTTGTAACTGCTGATATGGCAATTCAAGTAAACATAACAGAGGAATGTGCATATTGTCACTACAACCGAAGAGGACGGTGTCAACTTGACAGCAACGGGAGATTTTATTGTGCCAATGCTATGGTTGCAAAGCAAAAAGGTCTAAGTTGGAATGTTAAACTGGGTATTGCTGCCACGGTGATTATTGGAGTTGCAGTGGTGACTATTGGAGTTACAGTGCTGATGTTGTTGGCGTGTTGTTTACGGACAAAGATCTTCACTCCAGCATTTCTTTTGTTCAGAAAGGAAAGTTCAACTCATCAAATTATTGAGGAGTATATGAAAGAACATGGACCTCTTCCTGCTGCAGCTAGGTACAGTTATTCAGATATAAAAAAAATAACAAACTCTTTCAAAAACAAATTAGGCCAAGGAGGGTACGGAAGTGTTTACAAAGGGAAATTACATGATGAGCGTAATGTTGCAGTGAAGATTTTAAGTGAATCAAAAGGTGAAGGTGAAGATTTCATCAATGAAGTTGCTAGTATCAGTAGAACTTCACATGTCAATGTTGTTAGGCTTTTGGGGTTTTGTTTGGACGGCTCTAAAAAGGCGCTAATATATGAATTCATGCCTAATGGATCTCTTGAGAAGTTCGTATATGAAGAGAAAAATCCACTGCAAGATGATCGGCAATTGGATTGCAAAACTTTGTTTCATATTGCAGTTGGTGTTGCTCGTGGATTAGAGTACTTACATAGAGGTTGTAACACTAGAATTTTACATTTTGACATAAAGCCTCATAATATATTACTAGATGAGGATTTCTGTCCAAAAATTTCTGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAACACTGTATCCATCTTTGGTGCAAGGGGAACACCAGGATATATTGCTCCTGAGTTGTTTTCCAGAAGTTTTGGTAGTGTGTCACATAAATCAGATGTCTATAGTTATGGAATGATGGTTTTAGAGATGGTTGGACGAAGAAAGAACATTAAGGTTGAAGTTGATTGTTCTAGTGAGTTATACTTTCCACACTGGATTTACAAGCGTCTTGAATTGAATCAGGATCTTGGACTTAGGTGTATTAACAATGAAGTTGATGAAGAAATGGTAAGAAAAATGACAGTGGTAAGTTTATGGTGCATACAAACCAATCCTTCGAATCGACCATCAATGCATAAAGTGGTGGAAATGTTGGAAGGGAGTCTTCAAGGGTTGGAAATGCCACCCAAACCCTTTTTGTCTTCTCCTTCAGTATCTCCAACCATTTCGTCATCTGAAATATTATAA 1938 0.3854 MASVNYQLLFLLFLHLMLRLVLAGGYENKYEGECPGSFRCGYLGNISFPFTTTQHRDCGLLPISNCDDASMNPKMIQFQNNGKQFDFEVEFVSPTKYHGGNTTCSCVFRDKSLRKLLQNQSCEALRYNYTLPPTPHFVSFHMETYTTLFMCNRILHVNPPTDMHNYTKCPPSDFYYQPHISTDKESWSAFTACANVGLPIKDVPDSDDPFTFVTADMAIQVNITEECAYCHYNRRGRCQLDSNGRFYCANAMVAKQKGLSWNVKLGIAATVIIGVAVVTIGVTVLMLLACCLRTKIFTPAFLLFRKESSTHQIIEEYMKEHGPLPAAARYSYSDIKKITNSFKNKLGQGGYGSVYKGKLHDERNVAVKILSESKGEGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFVYEEKNPLQDDRQLDCKTLFHIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDEDFCPKISDFGLAKICPRKENTVSIFGARGTPGYIAPELFSRSFGSVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLRCINNEVDEEMVRKMTVVSLWCIQTNPSNRPSMHKVVEMLEGSLQGLEMPPKPFLSSPSVSPTISSSEIL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03634 645 SUPERFAMILY Protein kinase-like (PK-like) 324 616 IPR011009 -
Vivi1g03634 645 Gene3D Phosphorylase Kinase; domain 1 313 414 - -
Vivi1g03634 645 SMART serkin_6 340 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03634 645 FunFam PR5-like receptor kinase 415 627 - -
Vivi1g03634 645 FunFam serine/threonine-protein kinase PBS1-like 307 414 - -
Vivi1g03634 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vivi1g03634 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 311 634 IPR045874 GO:0004672
Vivi1g03634 645 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Vivi1g03634 645 ProSiteProfiles Protein kinase domain profile. 340 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03634 645 Pfam Protein kinase domain 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03634 645 Gene3D Transferase(Phosphotransferase) domain 1 415 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03634 Vivi-Chr1 78065547 78072923 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03634 3 628 Receptor kinase-like Gene Family AT5G38260 37.692 7.00e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi1g03634 Pkinase 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03634 - - vvo:131610174 813.913