Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03631 ATGCACTTGATTATTAATTACTTGATAAATTATGCAGTTGCATCTTCTACTGGAGTACTTGGAGTTCTAGCTTTGTTGGCTTGGTTCTTGAGAAGGCGTTTTATCAGCAACAAAAACTCACCATACCAAATAATTGAGTTGTTTCTGAAAAACCATGGTCATCTAGCAGCTAAAAGATACACTTACACACAAATAATAAAAGCAACCAATTCATTCAAAAACAAACTAGGTCAAGGAGGATACGGCAGTGTATACAAAGGAAAATTACAAGATGGAAGTCTCGTGGCAGTAAAGATATTAAGTGAATCCAATGGTAACGGTGAAGAATTCATCAATGAGGTTGCTAGTATTAGTGTCACTTCTCATGTTAATATCGTTAGTTTATTGGGATTCTGTTTAGAAGGTTCGAAAAGAGCTTTGATATATGACTACATGCCTAACGGATCACTAGAAAAGTTCATAAATGAAGACAAAGATCCACTAAAGCTAAGTTTTCCATTGAGTTGCAATACTATCTACAATATTGCAATAGGCGTTGCTCGAGGATTAGAGTATTTGCACAAGGGTTGCAATACTAAAATCTTGCACTTTGATATAAAACCTCATAATATATTACTAGATGGTGATTTTTGTCCTAAAATTTCAGATTTTGGACTTGCAAAAGTATGTCCAAGAAAAGAAAGTATCATATCTTTATTAGGTGCCAGAGGTACTGCAGGATACATTGCTCCCGAAGTGTTTTCTAGGAATTTCGGCTCCGTTTCTCACAAGGCTGATGTATATAGCTATGGAATGATGGTTTTAGAAATGGTTGGGGGAAAACAAAATAACAATATTGTTGATGTTGAAAGTTCGAGTGAAATTTATTTTCCACATTGGATTTACAAGCGCCTTGAACAAAATCAAGTACCTGGACTGCGGAGCTTTAATAATGAATTTGATAAAAAGATTGTTCAAAAGATGGTTATAGTAAGTTTATGGTGCATCCAAACTGATCCATCCCATAGGCCTGCAATGAGTAAAGTGGTAGAAATGATGGAAGGTAGCTTGGAATCTTTGCAAATAGCACCAAAACCTTTTTTGTCTTCACCTCCCAGGTTAGACCTACAAAATCTTCAGATTATAATACTTTCACATCTCAAGATTCGTATCCTTCAGGTATATTCTACTAATGATTTCTGTTAG 1185 0.3519 MHLIINYLINYAVASSTGVLGVLALLAWFLRRRFISNKNSPYQIIELFLKNHGHLAAKRYTYTQIIKATNSFKNKLGQGGYGSVYKGKLQDGSLVAVKILSESNGNGEEFINEVASISVTSHVNIVSLLGFCLEGSKRALIYDYMPNGSLEKFINEDKDPLKLSFPLSCNTIYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDGDFCPKISDFGLAKVCPRKESIISLLGARGTAGYIAPEVFSRNFGSVSHKADVYSYGMMVLEMVGGKQNNNIVDVESSSEIYFPHWIYKRLEQNQVPGLRSFNNEFDKKIVQKMVIVSLWCIQTDPSHRPAMSKVVEMMEGSLESLQIAPKPFLSSPPRLDLQNLQIIILSHLKIRILQVYSTNDFC 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03631 394 FunFam serine/threonine-protein kinase PBS1-like 46 144 - -
Vivi1g03631 394 ProSiteProfiles Protein kinase domain profile. 70 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03631 394 SMART serkin_6 70 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03631 394 Pfam Protein kinase domain 73 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03631 394 Gene3D Transferase(Phosphotransferase) domain 1 145 357 - -
Vivi1g03631 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vivi1g03631 394 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Vivi1g03631 394 FunFam PR5-like receptor kinase 145 358 - -
Vivi1g03631 394 Gene3D Phosphorylase Kinase; domain 1 49 144 - -
Vivi1g03631 394 PANTHER RUST RESISTANCE KINASE LR10-RELATED 44 363 IPR045874 GO:0004672
Vivi1g03631 394 SUPERFAMILY Protein kinase-like (PK-like) 54 346 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03631 Vivi-Chr1 78036189 78037682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03631 58 361 Receptor kinase-like Gene Family AT4G18250 59.807 1.12e-127 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi1g03631 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03631 - - psat:127098536 638.262