Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03629 ATGTTGGTGCATTATTTGGAGGGTGAGACTCGTGTTGAAGCTATTGCACAGGAGTTGCGAGACAGGGACGAAGCATTACGTCAGCTGAAGTTCAATTTACAAAATGCTCAAGAACAAATGAAGCATTTTGCTGACAAAAAAAGGAGGGCAGTTCATTATGATATTGGGGACTGGGTATTTTTGAAGTCGCGTCCTCACCGGCAGCATTCTGTGGTTCGTAGAATCCACCAAAAGCTTTCTCCTCGTTTTTTTGGGCCGTTCCAAATTATTCAGAAGATTGGACAGGTTGCATACAAACTGCAATTACCGGTATCTTCCAAGATTCATCCTATCTTCCATGTCTCTCAGCTGAAGAAAGCAGTCGGTAATTACATTGCTATTCCAGAGTTACCAGCCAGTTTAGAAACAGACAAGAGAGCCATCATTCCGGCTAGGGTGCTGTCTTGGAGGGATAGATGGGAGCAGGGTCAACACAAGAGGGAATGGCTCATCCAGTGGGAAGGTATGGATGTTGGTGATGCTACTTGGGAAGAAGAGCTCCTGTTGAAGAGTCAATTTCCAGATCTTAGCCTTGAGGACAAGGCTAGTGTTGAAGGAGGGGGTGATGATAGGAAGGAGGCTGAGACCATTGATAATGAAGGGGAGATTTTTAATTACTTGATAAATTATGCAGTTGCATCTTCTACTGGAGTACTTGGAGTTCTAGCTTTATTGGCTTGGTTCTTGAGAAGGCGTTTTATCAGCAACAAAAACTCACCATACCAAATAATTGAGTTGTTTCTGAAAAACCATGGTCATCTAGCAGCTAAAAGATACACTTATACAGATATAAAAAAAGCAACCAATTCATTCAAAAACAAACTAGGTCACGGAGGATACGGAAGTGTATACAAAGGAAAATTACAAGATGGGAGTCTCGTGGCAGTAAAGATATTAAGTGAATCCAACGGTAACGGTGAAGAGTTCATTAACGAGGTTGCTAGTATTAGTGTCACTTCTCATGTTAATATCGTTAGTTTATTGGGATTCTGTTTAGAAGGTTCGAAAAGAGCTTTGATATATGACTACATGCCTAACGGATCACTAGAAAAGTTCATAAATGAAGACAAAGATCCACTAAAGCTAAGTTTTCCATTGAGTTGCAATACTATCTACAATATTGCAATAGGCGTTGCTCGAGGATTAGAGTATTTGCACAAGGGTTGCAATACTAAAATCTTGCATTTTGATATAAAACCTCATAATATATTGCTAGATGGTGATTTTTGTCCTAAAATTTCAGATTTTGGACTTGCAAAAGTATGTGCGAGAAAAGAAATGTTCTCTAGAAATTTCGGTTCAGTTTCTCACAAGTCTGATGTATATAGCTATGGAATGATGGTTTTAGAAATGGTTGGTGGAAAACACAATAACAATATGGTTGATGATGAACGGTCGAGTGAAATTTATTTTCCACACTGGATTTACAAGCGCCTTGAGCTGAATCAAGAACCTAGACTGCAGAGTAATAATAATAAATTTGATAAACAAATTGTTCGAAAGATGATTATAGTAAGCTTATGGTGCATCCAAACTGATCCATCCCATAGGCCTGAAATGAGTAAAGTAGTAGAAATGATGGAAGGTAGCTTGGAATCTTTGCAAATACCACCAAAACCTTTCCTGTCTTCACCTCCTAGGCCTCCCTCAGAATCATCGGATTGTAACACTTACACTTACACATCTCATGATTGGTATCCTTCAGGCACACTCCATAGTCCATACCACTGA 1770 0.3944 MLVHYLEGETRVEAIAQELRDRDEALRQLKFNLQNAQEQMKHFADKKRRAVHYDIGDWVFLKSRPHRQHSVVRRIHQKLSPRFFGPFQIIQKIGQVAYKLQLPVSSKIHPIFHVSQLKKAVGNYIAIPELPASLETDKRAIIPARVLSWRDRWEQGQHKREWLIQWEGMDVGDATWEEELLLKSQFPDLSLEDKASVEGGGDDRKEAETIDNEGEIFNYLINYAVASSTGVLGVLALLAWFLRRRFISNKNSPYQIIELFLKNHGHLAAKRYTYTDIKKATNSFKNKLGHGGYGSVYKGKLQDGSLVAVKILSESNGNGEEFINEVASISVTSHVNIVSLLGFCLEGSKRALIYDYMPNGSLEKFINEDKDPLKLSFPLSCNTIYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDGDFCPKISDFGLAKVCARKEMFSRNFGSVSHKSDVYSYGMMVLEMVGGKHNNNMVDDERSSEIYFPHWIYKRLELNQEPRLQSNNNKFDKQIVRKMIIVSLWCIQTDPSHRPEMSKVVEMMEGSLESLQIPPKPFLSSPPRPPSESSDCNTYTYTSHDWYPSGTLHSPYH 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03629 589 Gene3D Phosphorylase Kinase; domain 1 261 356 - -
Vivi1g03629 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Vivi1g03629 589 Gene3D Transferase(Phosphotransferase) domain 1 357 549 - -
Vivi1g03629 589 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Vivi1g03629 589 Coils Coil 19 46 - -
Vivi1g03629 589 MobiDBLite consensus disorder prediction 548 568 - -
Vivi1g03629 589 FunFam Os07g0541700 protein 357 448 - -
Vivi1g03629 589 FunFam serine/threonine-protein kinase PBS1-like 258 356 - -
Vivi1g03629 589 SUPERFAMILY Chromo domain-like 107 185 IPR016197 -
Vivi1g03629 589 ProSiteProfiles Chromo and chromo shadow domain profile. 141 189 IPR000953 -
Vivi1g03629 589 PANTHER RUST RESISTANCE KINASE LR10-RELATED 256 561 IPR045874 GO:0004672
Vivi1g03629 589 Pfam Protein kinase domain 285 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03629 589 ProSiteProfiles Protein kinase domain profile. 282 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03629 589 SUPERFAMILY Protein kinase-like (PK-like) 266 540 IPR011009 -
Vivi1g03629 589 SMART serkin_6 282 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03629 Vivi-Chr1 78007545 78010568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03629 270 576 Receptor kinase-like Gene Family AT5G38280 53.012 2.52e-110 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi1g03629 Pkinase 2.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03629 - - psat:127098536 599.356