Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03627 ATGAACAAAAAAAGCCCTTTGTTTATCTCTTCTCCTCCAATTTATTCATACTGCATCACCCTCTTCTATTTCCTCACCACAACCACTCTATGCTATGCTGTAGATCCATATTTTGAAGCTTGTGAACCCAAAACATGTGGCAACCAAACTATAAGCTACCCTTTCTACATCAAAGGAACACAACAACCCTTTTGCGGCTACCCTGGTTTTGGTCTCACTTGTGACAATACTATTGGTCTTCCAATCCTTAATCTTTCCAACACCTTTTATACAATCAACCAAATTTTCTATCAGAACCATTCATTGAGAGTGTCCAACCCTATGTTTTCAAGAACAGACACAAAAAAAGGTTGTCTTTCACTTTCACCTACTCAAAACCCCAGTTTTCCTAATAACACATTCTATCTTGCACATGACCAAACTGAAGTGAGATTGTTCTTCGGATGTGACTCATGGAAGCTACCCAGAACTCTGCAAAGGAACAAAATTGGTTGCTCTGCAGGAAACAAAACGAGTTTGGTTGTAGCATTGTATGGAGATGATAAAAATGCAAGCTTTGTGTCAAAGAATTGCAGGGATGAAGTGGTTTACACGTGGGTGGAAAATGGGGTGAAAGGAAGCATTCAAGAGGCTCTGAGAAATGGGTTTCGATTGAATTGGATAGCTAATGATTGCAGGGAATGTAACAGTACTGGAGGGAGGTGTGGGTTTGATGCAGATGCATACAGTTTCAGATGTTACTGCGCCGATAGAGTTCATGCACGAAAATGTGATCCAGCTGCAGTTGCAGTTGCAGAGAAGTCTCAGGTGGTGCATATAGTGACAATAGTGGGCTTGGTAGCTGGAGTTGCATTTGCCTTGCTGATTGTCTTACTTTGTTGCTTTGGAAAAAAGATCTGCCCTCCCACATTTCGTATGTTTAAGAAGAAGAATCCAACCCATCAAATTATTGAAAAGTTTTTGAAGGAACATGGACCTCTTTCTGCTGCTAGGTACAGTTATTCAGATATCAAAAAAATAACTAATTCTTTCAAAAATAAATTAGGCCAAGGAGGGTACGGAAGTGTATACAAAGGAAAATTACATGATGAGCATGATGTTGCAGTGAAGATTCTGAGTGAATCAAAAGGTAATGGTGAAGATTTCATTAATGAAGTTGCTAGTATCAGTAGAACTTCACATGTCAATGTTGTTAGACTTTTGGGGTTCTGTTTGGAGGGTTCTAAAAAGGCACTAATATACGAGTTTATGCCTAATGGATCTCTTGAAAAGTTCATATATGAAAATAAAAATCCAATGCAGGATGATCTCCAATTGAATTGCAAAACATTGTATGATATTGCAGTTGGCGTTTCTCGTGGATTAGAGTACTTGCATAGAGGCTGCAACACTAGAATCTTACATTTTGACATAAAGCCTCATAATATACTACTAGATGATGATTTTTGTCCAAAAATTTCTGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGTATAGTATCCGTATTTGGTGCGAGAGGAACACCAGGATATATTGCTCCAGAGTTGTTTTCTAGAAATTTTGGTGAGGTGTCACATAAATCGGATGTCTACAGCTATGGAATGATGGTTTTAGAGATGGTCGGGCGAAGAAAGAACATTAAGATTGAAGTGGACTTTTCTAGCGAATTATATTTTCCTCACTGGATTTACAAGCGTCTTGAGTTAAATCAGGATCTTGGATTAAAGTGTATTAAAAATGAGATTGATGAAGAAATGGTAAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACCAACCCTTTGAATCGACCATCAATGCATAAAGTGGTGGAAATGTTGGAAGGGAACCTTCAAGTGTTGGAAATGCCACCCAAACCCTTTTTATCTTCTCCTTCAACATCTCCAACCCATTTATCATTTGAAACATTGTAA 1944 0.3807 MNKKSPLFISSPPIYSYCITLFYFLTTTTLCYAVDPYFEACEPKTCGNQTISYPFYIKGTQQPFCGYPGFGLTCDNTIGLPILNLSNTFYTINQIFYQNHSLRVSNPMFSRTDTKKGCLSLSPTQNPSFPNNTFYLAHDQTEVRLFFGCDSWKLPRTLQRNKIGCSAGNKTSLVVALYGDDKNASFVSKNCRDEVVYTWVENGVKGSIQEALRNGFRLNWIANDCRECNSTGGRCGFDADAYSFRCYCADRVHARKCDPAAVAVAEKSQVVHIVTIVGLVAGVAFALLIVLLCCFGKKICPPTFRMFKKKNPTHQIIEKFLKEHGPLSAARYSYSDIKKITNSFKNKLGQGGYGSVYKGKLHDEHDVAVKILSESKGNGEDFINEVASISRTSHVNVVRLLGFCLEGSKKALIYEFMPNGSLEKFIYENKNPMQDDLQLNCKTLYDIAVGVSRGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKICPRKESIVSVFGARGTPGYIAPELFSRNFGEVSHKSDVYSYGMMVLEMVGRRKNIKIEVDFSSELYFPHWIYKRLELNQDLGLKCIKNEIDEEMVRKMTVVSLWCIQTNPLNRPSMHKVVEMLEGNLQVLEMPPKPFLSSPSTSPTHLSFETL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03627 647 Pfam Protein kinase domain 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03627 647 ProSiteProfiles Protein kinase domain profile. 342 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03627 647 FunFam PR5-like receptor kinase 417 629 - -
Vivi1g03627 647 Gene3D Transferase(Phosphotransferase) domain 1 417 626 - -
Vivi1g03627 647 Gene3D Phosphorylase Kinase; domain 1 318 416 - -
Vivi1g03627 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vivi1g03627 647 Pfam Wall-associated receptor kinase galacturonan-binding 41 105 IPR025287 GO:0030247
Vivi1g03627 647 Pfam Wall-associated receptor kinase C-terminal 178 250 IPR032872 -
Vivi1g03627 647 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Vivi1g03627 647 FunFam serine/threonine-protein kinase PBS1-like 311 416 - -
Vivi1g03627 647 SMART serkin_6 342 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03627 647 SUPERFAMILY Protein kinase-like (PK-like) 326 618 IPR011009 -
Vivi1g03627 647 PANTHER RUST RESISTANCE KINASE LR10-RELATED 314 634 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03627 Vivi-Chr1 77980262 77983103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03627 16 630 Receptor kinase-like Gene Family AT5G38260 41.066 1.01e-142 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi1g03627 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03627 - - mtr:11418569 969.918