Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03624 ATGAACAAAAAATGCTCTTTGTTTATCTCTTCTCCTCTGATTTATTCATACTGCATCACTCTCTTCTATTTCCTCACAACAACCACTCTAAGCTATGGTGTGGATCCAAATTTTGAAGCTTGTGAACCTAAAACATGTGGCAACCAAAGTATAAGCTACCCTTTCTACATCAAAGAAACACAACCAACCTTTTGTGGCTACCCTGGTTTTGGTCTCACTTGTGACAATACTATTGGTTTTCCAATCCTTAATCTTTCCAACACCTTTTACACAATCAACCAATTTTTTTATCAGAATCATTCATTCAGAGTGTCTAATGCTATTTTTTCAAGACCAGACACAAAAAAAGGTTGTCTTTTATTTTCACCTACCCAAAACCTCAGTTTTCCAACTAACTTGTTCTATCTTGCACATAACCAAACTGAAGTGAGGTTGTTCTTCGGATGTGACTCATCAAAGCTACCCAGAACTTTGCAAAGGAACGAAGTCGGTTGCTCTGCAGGAAACGAAACAAATTCGGTTGTGGCATTGTATGCGGATGATAAAAATGTAAGCTTTGTGTCAAAGAATTGTAGGGATGAAGTGGTTTATGCGAGGGTGGAAAATGGTGTGGAAGGAGGGATTCAAGAGGCTCTAAGAAATGGGTTTCGATTGAATTGGATAGCTAGTGATTGCAGGGAATGTAACAGTACTGGAGGAAGATGTGGGTTTGATGCAGATATGTACAGTTTCAGATGTTACTGTACGGATAGAGTTCATCCTGCAAAATGTGATCCAGTTGCAGAGAAGTCTCAGGTGGTGCATATAGTGACAATAGGCTTGGTGGCTGGAGTTGCATTTGCCTTGCTGACTGTCTTAGTTTGTTGCTTTGGAAAAAAGATCTGCCCTCCTACATTTCGTATGTTCAAGAAGAAGAATCAAACCCATCAAATTATTGAAAAGTTTTTGAAGGAACATGGACCTCTTTCTGCTGCTAGGTACAGTTATTCAGATATCAAGAAAATAACAAATTCTTTCAAAAACAAATTAGGCCAAGGAGGGTACGGAAGTGTATACAAAGGGAAATTACATGATGAGCGTGACGTTGCAGTGAAGATTTTGAGTGAATCAAAGGGTAATGGTGAAGATTTCATTAATGAAGTTGCTAGTATCAGTAGAACTTCACATGTCAATGTTGTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAGTCACTAGTATATGAATTCATGCCTAATGGATCTCTTGAAAAGTTCATATATGAAGAGAAAAATCAAAGGCAGGATGCTCTCCAATTGGATTGCAAAACATTGTATGATATTGCAGTTGGCGTTGCTCGTGGATTAGAGTACTTGCATAGAGGCTGCAACACTAGAATCTTACATTTTGACATAAAGCCTCATAATATATTACTAGATGATGATTTTTGTCCTAAAATTTCTGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGTATAGTATCCGTATTTGGTGCGAGAGGAACACCAGGATATATTGCTCCAGAGTTGTTTTCTAGAAATTTTGGTGAGGTGTCACATAAATCGGATGTCTACAGCTATGGAATGATGGTTTTAGAGATGGTCGGGCGAAGAAAGAACATTAAGATTGAAGTGGACTTTTCTAGCGAATTATATTTTCCTCACTGGATTTACAAGCGTCTTGAGTTAAATCAGGATCTTGGATTAAAGTGTATTAAAAATGAGATTGATGAAGAAATGGTAAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACCAACCCTTTGAATCGACCATCAATGCATAAAGTGGTGGAAATGTTGGAAGGGAACCTTCAAGTGTTGGAAATGCCACCCAAACCCTTTTTATCTTCTCCTTCAACATCTCCAACCCATTTATCATTTGAAACATTGTAA 1929 0.3764 MNKKCSLFISSPLIYSYCITLFYFLTTTTLSYGVDPNFEACEPKTCGNQSISYPFYIKETQPTFCGYPGFGLTCDNTIGFPILNLSNTFYTINQFFYQNHSFRVSNAIFSRPDTKKGCLLFSPTQNLSFPTNLFYLAHNQTEVRLFFGCDSSKLPRTLQRNEVGCSAGNETNSVVALYADDKNVSFVSKNCRDEVVYARVENGVEGGIQEALRNGFRLNWIASDCRECNSTGGRCGFDADMYSFRCYCTDRVHPAKCDPVAEKSQVVHIVTIGLVAGVAFALLTVLVCCFGKKICPPTFRMFKKKNQTHQIIEKFLKEHGPLSAARYSYSDIKKITNSFKNKLGQGGYGSVYKGKLHDERDVAVKILSESKGNGEDFINEVASISRTSHVNVVRLLGFCLDGSKKSLVYEFMPNGSLEKFIYEEKNQRQDALQLDCKTLYDIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKICPRKESIVSVFGARGTPGYIAPELFSRNFGEVSHKSDVYSYGMMVLEMVGRRKNIKIEVDFSSELYFPHWIYKRLELNQDLGLKCIKNEIDEEMVRKMTVVSLWCIQTNPLNRPSMHKVVEMLEGNLQVLEMPPKPFLSSPSTSPTHLSFETL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03624 642 SMART serkin_6 337 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03624 642 Pfam Protein kinase domain 340 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03624 642 SUPERFAMILY Protein kinase-like (PK-like) 321 613 IPR011009 -
Vivi1g03624 642 FunFam serine/threonine-protein kinase PBS1-like 303 411 - -
Vivi1g03624 642 Pfam Wall-associated receptor kinase C-terminal 180 250 IPR032872 -
Vivi1g03624 642 Pfam Wall-associated receptor kinase galacturonan-binding 41 105 IPR025287 GO:0030247
Vivi1g03624 642 FunFam PR5-like receptor kinase 412 624 - -
Vivi1g03624 642 CDD STKc_IRAK 343 614 - -
Vivi1g03624 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Vivi1g03624 642 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Vivi1g03624 642 Gene3D Transferase(Phosphotransferase) domain 1 412 621 - -
Vivi1g03624 642 PANTHER RUST RESISTANCE KINASE LR10-RELATED 307 629 IPR045874 GO:0004672
Vivi1g03624 642 ProSiteProfiles Protein kinase domain profile. 337 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03624 642 Gene3D Phosphorylase Kinase; domain 1 299 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03624 Vivi-Chr1 77963495 77966299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03624 6 625 Receptor kinase-like Gene Family AT5G38260 40.747 1.10e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi1g03624 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03624 - - mtr:11418569 956.822