Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03623 ATGTTTTTACTCATATATCAGCTCCTCTTTCTGTCATTCTTCATTAAAATTCAACTCCTTCTAGCATCAGCTAATTGTCCATCTTCAATAAACTGCGGATATCTCGGACAAATCTCATTTCCTTTCACAACCACACAACACCCAAACTGTGGCATGCTAATCATACACGGTTGCGACGACACAGAACCACAGTCCAAAAAAACCATCCAAAACAACAAAACATGGTTCGATATCACCAAAATCGATCCCTACACTATCACAATCAAAGATGACGATCTCCACGACATACTGCTGAAAAAAAGTTGCGACATTCTAAACTACAACTCTAAGTTTACTGTCAACACGCCTTTGGTTTCATCTCGTTTACAGAATTACGTAACTGTTTACGGATGCAACAGCAGCAACACAGTCGATCTTCAACAGTACTATTCTGTTTCTAATTCTACTTCCATCTGTAGAAACGAGAACAACTTTAGTTTGAATGGTGTTTCAGATTCGGATATTAAGAGTAATAAAGCTATTGTAGTTATAACTGATTTTGTTTCTTCGAGTTCGAATCATCTCAGAGGATGTTCGAGGGCTCAGATTCCAACGAGTTTTGAGGTTAAACGTCTTGATCCGGATGGACTTTTTAACTCTTTAAGTGATGAAATTGCTATCAAATTACAAGTTTCTCAGAATTGTTCTACTTGTCATGATCTTGATGGAGGTCAATGCCGTCTTGATGACTACGGCCAGTTTTATTGTCAACAAGATAATTCTAAAAAGACCCGTCTTATAGTGGTTGCAGTTGCATCTTCTGCCGGAGTACTTGTAGTTCTAGCAATTTTGGGTTGGTTCTTGAGAAGGCGATTTTTCAACGATAAAAACCCTCCATACCAAATAATTGAGTTGTTTCTTAAAAACCATGGTCACCTTGCAGCTAAGAGATACAGTTATGCAGAGATAAAGAAAGCAACAAATTCATTCAAAAACAAACTCGGTCAAGGAGGATATGGCAGCGTATACAAAGGAAAATTACAAGATGGAAGTCTCGTGGCAGTTAAAGTATTAAGCGAATCCAATGGTAATGGTGAAGAATTCATCAACGAGGTTGCTAGTATTAGTGTCACTTCTCATGTTAACATTGTTAGTTTATTAGGATTCTATCTAGAAGGTTCTAAAAGAGCTTTGATATATGATTACATGCCTAATGGATCACTTGAGAAGTTCATATATGAAGACAAAGATCCATTAAAGCTAAATCTTCAATTGAGTTGCAAAACTATCTACAATATTGCAGTTGGAGTAGCTAGAGGATTAGAGTATTTGCACAAGGGTTGCAATACTAAAATCTTGCATTTTGATATAAAACCTCACAATATACTGTTAGATGATGATTTTTGTCCTAAGGTTTCAGATTTTGGACTTGCAAAAGTATGTCCAAGAAAAGATAGTATTATATCTTTATTGGGCACCAGAGGTACAGCAGGATACATTGCTCCTGAAGTGTTCTCTAGAAATTTCGGTGGTGTATCTCACAAATCTGATGTTTATAGCTATGGAATGATGGTTTTAGAAATGGTTGGGGGGAAACAGAATAACAATGTCGTTGAAGTTGAACGGTCGAGTGAAATTTATTTTCCACACTGGGTTTACAAGCGTCTTGAACTGAATCAAGATCCTAGATTGCGTAGCATTAAAAGTGAATTTGATAAACAAATTGTTCAAAAGATGATTATAGTAAGCTTATGGTGCATCCAAACTGATCCATCACATAGGCCTGCAATGAGTAAAGTGGTTGATATGATGGAAGGTAGCTTGGAATCTTTGCAAATACCACCAAAACCTTGTCTCTTTTCACCTCCCAGGTCTCCCTCAAGATCATCAGATTATAACACTCATAGTACATTTCAGGATTTGTATCATTCAGGCTCACTTCAAACCACTGATTCTGAACCTCTAATCATTCTGCCTCAAGAGAGTTCGTGGGAGACCTCCATCCCCAGAAGAGAATGA 1998 0.3729 MFLLIYQLLFLSFFIKIQLLLASANCPSSINCGYLGQISFPFTTTQHPNCGMLIIHGCDDTEPQSKKTIQNNKTWFDITKIDPYTITIKDDDLHDILLKKSCDILNYNSKFTVNTPLVSSRLQNYVTVYGCNSSNTVDLQQYYSVSNSTSICRNENNFSLNGVSDSDIKSNKAIVVITDFVSSSSNHLRGCSRAQIPTSFEVKRLDPDGLFNSLSDEIAIKLQVSQNCSTCHDLDGGQCRLDDYGQFYCQQDNSKKTRLIVVAVASSAGVLVVLAILGWFLRRRFFNDKNPPYQIIELFLKNHGHLAAKRYSYAEIKKATNSFKNKLGQGGYGSVYKGKLQDGSLVAVKVLSESNGNGEEFINEVASISVTSHVNIVSLLGFYLEGSKRALIYDYMPNGSLEKFIYEDKDPLKLNLQLSCKTIYNIAVGVARGLEYLHKGCNTKILHFDIKPHNILLDDDFCPKVSDFGLAKVCPRKDSIISLLGTRGTAGYIAPEVFSRNFGGVSHKSDVYSYGMMVLEMVGGKQNNNVVEVERSSEIYFPHWVYKRLELNQDPRLRSIKSEFDKQIVQKMIIVSLWCIQTDPSHRPAMSKVVDMMEGSLESLQIPPKPCLFSPPRSPSRSSDYNTHSTFQDLYHSGSLQTTDSEPLIILPQESSWETSIPRRE 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03623 665 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Vivi1g03623 665 Gene3D Phosphorylase Kinase; domain 1 300 395 - -
Vivi1g03623 665 SUPERFAMILY Protein kinase-like (PK-like) 305 597 IPR011009 -
Vivi1g03623 665 PANTHER RUST RESISTANCE KINASE LR10-RELATED 295 621 IPR045874 GO:0004672
Vivi1g03623 665 FunFam serine/threonine-protein kinase PBS1-like 297 395 - -
Vivi1g03623 665 FunFam PR5-like receptor kinase 396 609 - -
Vivi1g03623 665 ProSiteProfiles Protein kinase domain profile. 321 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03623 665 Pfam Protein kinase domain 324 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03623 665 Gene3D Transferase(Phosphotransferase) domain 1 396 606 - -
Vivi1g03623 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vivi1g03623 665 SMART serkin_6 321 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03623 Vivi-Chr1 77959609 77963138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03623 251 612 Receptor kinase-like Gene Family AT4G18250 53.784 1.09e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi1g03623 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03623 - - psat:127098536 1164.06