Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03620 ATGGCGTCAACGCTCTCTCTTCTCACCCTTCTAACGCTCTCTCATTTTCTCCTCATTGTTCAATCTTCTCAAAACCCAGACTTCGAAGCTCTCCTAGCTTTCAAAACCGCTTCAGACCCATCCAAAAAACTCACAACATGGAAAACTGGCACCGACCCATGCACTTGGAACGGCGTTTTGTGTGTCAAAGACCGAGTTTCACGACTCGTTCTCGAAAATCTCGACCTTCAAGGCTCCATTGAACCGTTAACCTCTCTAACTCAGCTCCGAGTTTTGAGTCTCAAGGGTAACCGTTTCTCCGGCAAAGTTCCAAATCTCTCAAACTTCTCTTCACTGAAACTTCTCTTCCTCTCTCACAACCATTTCTCCGGCGAGTTCCCGGTAACTCTAACGTCGCTCTTCCGTCTCTACCGTCTCGATCTGTCTTACAATAACTTCTCCGGCGAGATTCCGGTAACAGTCAACCGTTTACCTCACCTCCTCACTCTCCGTCTCGATATGAATCAATTCTCCGGCCTCATTCCCGAACTAAACCTTCCCGGTTTACAAGACTTCAATGTCTCCGGTAACAATCTCTCCGGCGAGATACCGAAAACTCTGTCGACATTCTCTGAATCCTCGTTCTGGAAAAACTCGTTTCTCTGTGGAGCTCCGTTGGAGAAATGCAAAGCGGTTGAACCAAACAAACCCGGATCCGAAGGTGCCACAGCTACTTCACCATTGGTACCAAGCAGTGAAACCCCAACAACAACAGTTTCATCTTCACCTAGCACAATGCCAACAACTACACCAACAACAACAAACCCCAAAAGCCATGAAAAAAGAGGTTCGAAAATGAGTCCTATAGTTCTAATAGCAATCATAGTAGGCGACATTTTCGTTCTCGGAATCGTTTGTTTAATTCTCTACTGCTATTTCTGGAGAAACCACGCTTCCAAATCGAAACAGCGAAAAGGGTTGAAGCTATTCGAGAGTGAAAAGATAGTGTATTCTTCGAGTCCTTACCCTACTCAAGGAGGGTTTGAGAGGGGTAGAATGGTGTTTTTCGAAGGCGAGAAAAGGTTCGAGCTTGAAGATTTGTTGCGTGCTTCAGCTGAAATGCTTGGGAAAGGTGGATTTGGAACTGCTTATAAAGCTGTGCTTGATGATGGGAATGTCGTTGCTGTGAAGAGGTTGAAAGATGCGCAGATTGCAGGGAAGAGGGAATTTGAGCAACATATGGAAGTTCTTGGAAGGATTAGGCACCCGAATGTTGTGAGTTTGAGAGCTTATTATTTTGCAAGAGAAGAGAAGCTTTTGGTGTATGATTTCATGCCTAATGCTACTCTGTTCTGGCTTCTTCATGGAAACAGAGGACCTGGAAGAACCCCACTGGATTGGACCACAAGGCTTAAGATAGCAGCTGGTGCAGCACAAGGTGTAACTTTCATTCACAATTCATGTAAATCCCTTAAACTCACCCATGGTAACATCAAATCCACCAATATCCTCCTTGACAAGCAAGGAAATGCCCGTGTGTCGGATTTTGGGCTTTCAATCTTCAACAGCCCAAGCCCAATTGGAGCTGGTGGTAGATCAAACGGTTACCGTGCTCCTGAAGTAACCGACGGTCGAAAACAGTCGCAGAAATCTGATGTATACTCTTTTGGTGTTCTGTTGCTGGAGCTGCTCACAGGGAAGTGTCCTTCTGCGGTGGAGAGTGGTGGAAGTGGAGGTGGTTATGGTGGTTCGATGGTTGATCTACCTAGATGGGTTCAATCTGTTGTGAGAGAGGAATGGACTGCTGAGGTTTTTGATTTGGAGTTGATGAGGTACAAGGATATTGAAGAGGAAATGGTTGGGTTGCTTCAGATTGCTATGTCTTGTACTGCTGCTTTGCCCGATCAACGGCCGAGAATGTCACATGTTGTTAAGATGATTGAGGACTTGCGTGGGGTCGAAGTGTCACCATGTCATGACACGGCGGGCTCTGTCTCTGACTCACCTTCTTTGTCTGAAGATGCCTGTGCTGGTACTAGTAGTCAGTAA 2028 0.461 MASTLSLLTLLTLSHFLLIVQSSQNPDFEALLAFKTASDPSKKLTTWKTGTDPCTWNGVLCVKDRVSRLVLENLDLQGSIEPLTSLTQLRVLSLKGNRFSGKVPNLSNFSSLKLLFLSHNHFSGEFPVTLTSLFRLYRLDLSYNNFSGEIPVTVNRLPHLLTLRLDMNQFSGLIPELNLPGLQDFNVSGNNLSGEIPKTLSTFSESSFWKNSFLCGAPLEKCKAVEPNKPGSEGATATSPLVPSSETPTTTVSSSPSTMPTTTPTTTNPKSHEKRGSKMSPIVLIAIIVGDIFVLGIVCLILYCYFWRNHASKSKQRKGLKLFESEKIVYSSSPYPTQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEVLGRIRHPNVVSLRAYYFAREEKLLVYDFMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAAQGVTFIHNSCKSLKLTHGNIKSTNILLDKQGNARVSDFGLSIFNSPSPIGAGGRSNGYRAPEVTDGRKQSQKSDVYSFGVLLLELLTGKCPSAVESGGSGGGYGGSMVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAALPDQRPRMSHVVKMIEDLRGVEVSPCHDTAGSVSDSPSLSEDACAGTSSQ 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03620 675 CDD STKc_IRAK 368 643 - -
Vivi1g03620 675 ProSiteProfiles Protein kinase domain profile. 362 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03620 675 FunFam pollen receptor-like kinase 1 335 437 - -
Vivi1g03620 675 Gene3D Transferase(Phosphotransferase) domain 1 438 654 - -
Vivi1g03620 675 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 438 650 - -
Vivi1g03620 675 Gene3D Ribonuclease Inhibitor 18 83 IPR032675 -
Vivi1g03620 675 MobiDBLite consensus disorder prediction 651 675 - -
Vivi1g03620 675 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Vivi1g03620 675 SUPERFAMILY L domain-like 38 220 - -
Vivi1g03620 675 ProSitePatterns Protein kinases ATP-binding region signature. 368 400 IPR017441 GO:0005524
Vivi1g03620 675 SUPERFAMILY Protein kinase-like (PK-like) 366 640 IPR011009 -
Vivi1g03620 675 MobiDBLite consensus disorder prediction 232 270 - -
Vivi1g03620 675 MobiDBLite consensus disorder prediction 226 275 - -
Vivi1g03620 675 Gene3D Ribonuclease Inhibitor 84 229 IPR032675 -
Vivi1g03620 675 FunFam Nuclear pore complex protein NUP107 24 176 - -
Vivi1g03620 675 MobiDBLite consensus disorder prediction 654 675 - -
Vivi1g03620 675 Pfam Protein kinase domain 365 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03620 675 Gene3D Phosphorylase Kinase; domain 1 342 437 - -
Vivi1g03620 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 645 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03620 Vivi-Chr1 77864545 77868160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03620 27 675 Receptor kinase-like Gene Family AT1G68400 64.857 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi1g03620 Pkinase 6.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03620 - - cam:105851082 1073.54