Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03602 ATGAACATGTACCATGTTACACACACTCCTACAATTCCATCTTCAGTTTCTTTGTTCTTGAACACCACTAGAACACTAGCTATGTCAAAAACTACAAAGAAAGATGAAGAAAATGAGCTGAGAAGAGGACCATGGACTCTTGAAGAAGATAGTTTACTAATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTTAGATGGTTGAATTACTTGAAACCTGACATTAAAAGAGGGAATCTTACTCCTCAAGAACAGTTGTTGATCCTTGAACTTCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCGCAACATCTACCGGGAAGAACAGATAATGAGATCAAGAACTATTGGCGAACAAGGGTGCAAAAACAAGCACGCCAACTCAACATCGAATCCGGTAGCAAAAGATTCATTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTACTTCAAAAGATGGAACAGAACAACTCATCTCCAATCTCTGATCATTCTTCTATGACAAACATGAACAATTTCGGAAACTCTCTAGAAGCTTCAACTAGTAACTCAATCTCAACAAGCTTCAATGTTCCTTCACAAAGAGGATACATAGATGCTTCGAGCTGTGGAAATCATTCAAGTACTGTTTCAACCAGCTTCAACAATCCTTCTTTGGATTTCTTCCAATTTTCACAGCCACTTGAAGTTTCAGAAACCTCAAAAAGTGTTCCAAACATGTTGGAAAACAATGTTTATAATAATTGTCAAATCCAAGACAATTTCTATATTGATGATACAAATTATAACTATGGCTTGGAAGGTTTAAGCTTTGATCCATTGTCTTCAATGGAAAATTATGACTTTTCACAGTTTGATTTTCAAACTTCGGGGAATGGATGGATGCTAGACAACATGGCTAATAGTACTTTTTGGAATATGGATGCTATGTGA 990 0.3717 MNMYHVTHTPTIPSSVSLFLNTTRTLAMSKTTKKDEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNNSSPISDHSSMTNMNNFGNSLEASTSNSISTSFNVPSQRGYIDASSCGNHSSTVSTSFNNPSLDFFQFSQPLEVSETSKSVPNMLENNVYNNCQIQDNFYIDDTNYNYGLEGLSFDPLSSMENYDFSQFDFQTSGNGWMLDNMANSTFWNMDAM 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03602 329 CDD SANT 99 138 IPR001005 -
Vivi1g03602 329 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 36 213 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi1g03602 329 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Vivi1g03602 329 CDD SANT 44 89 IPR001005 -
Vivi1g03602 329 Gene3D - 39 95 - -
Vivi1g03602 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 144 IPR017930 -
Vivi1g03602 329 Gene3D - 98 140 - -
Vivi1g03602 329 FunFam Myb transcription factor 42 94 - -
Vivi1g03602 329 ProSiteProfiles Myb-like domain profile. 37 89 IPR001005 -
Vivi1g03602 329 SUPERFAMILY Homeodomain-like 40 136 IPR009057 -
Vivi1g03602 329 Pfam Myb-like DNA-binding domain 95 138 IPR001005 -
Vivi1g03602 329 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Vivi1g03602 329 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 57 66 IPR001345 GO:0003824
Vivi1g03602 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 89 IPR017930 -
Vivi1g03602 329 SMART sant 41 91 IPR001005 -
Vivi1g03602 329 SMART sant 94 142 IPR001005 -
Vivi1g03602 329 FunFam MYB transcription factor 99 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03602 Vivi-Chr1 77578262 77579907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03602 37 274 MYB Transcription Factor Family AT1G68320 56.800 5.75e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g03602 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03602 K09422 - gmx:100775834 451.44