Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03568 ATGACTTGTTCTAGTGAAACCGTAGCAAAAGCGGTTGGAGGCAAAACCGCTAGAGCTTGTGACAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCAGATGATGCTTTTCTTTGTCAAGGTTGTGATTCTTCGGTTCATTCTGCTAATTCGCTGGCGAGAAGACATGAGAGAGTTCGTTTGAAAACAGCTTCGTATAAATCCGCCGGAGGTGATAATAATGGATCCATCAATTCTGGTCCGTTTTCCGGTTTTACCAAGAAAGCTAGAACTCCGAGACAAGGGAAACAGAAGAATAATGCTAATGTTAATGTTGATGTTAATGTTAATAACCCGTTTCATCTTGTGCCGGAATTGGGATTTGATGAAGTTCATTCGGGATCGAACGAAGAGAATGAGGAGCAGTTGCTTTATAGGGTACCGATTTTCGATCCTTTTGTTGGTGAATTATGTACTAGTTCTCCTTCGGTTGGTTCAACTGAAGGAGGACTAGGAGCGGTGGTACCAGGTGTTTCTGCTTTCGCTTCTGATAGGAGCGAAAGAATGGTACAATTGGGAGGTGATAGTAATTATGAGATGGGGCTACTTCCGTCTGATATTGAATTAGCTGAATTTGCGGCCGATGTCGAGAGTTTATTGGGTAGGGGATTAGATAACGAGTGTATGGGGATGGAAGAGCTCGGATTGATTGATGCGAAGCATGAGGATGAGGAATGGGAGTGTAGTGGGAAAGTGAAGGAAGAAGGCGAAGAGATTCGTGAAGTTGTTGAGGGAGATAGTAATATAATTGATATAGGAAAAGAATCTTCATTTGAGTTGAATTTTGATTATGAAACGTGTGAAGAGGTGAAGGAGAAGGTTGGTTTGGATATAGAACAAAATGAAAATTGTAATAAGGGGAAAAGGAAAATGTCTTTGCAACTAGATTATGATGCCGTAATCATTGCATGGGATGGACAAAAATGTCCATGGACTAATGGTGATAAGCCTAATTTGGATGTTGATGAGATATGGCCTGATTGCATGGGAATTTATGGAACGGAGGTTCAATATCCGTATGGTGAATTAGGCGGATATGGATGTAATCCAGTAATGGTGGATGGAGGTAGAGAGGCAAGGGTTTCAAGATATAGAGAGAAGAGAAGAACAAGGTTGTTTTCGAAGAAAATAAGGTACGAGGTAAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGGTTTGTGAAGAGGACTTCCTTTGCAGTTCCAACATTTCCTTTGTTAAAATAA 1278 0.4108 MTCSSETVAKAVGGKTARACDSCITKRARWYCAADDAFLCQGCDSSVHSANSLARRHERVRLKTASYKSAGGDNNGSINSGPFSGFTKKARTPRQGKQKNNANVNVDVNVNNPFHLVPELGFDEVHSGSNEENEEQLLYRVPIFDPFVGELCTSSPSVGSTEGGLGAVVPGVSAFASDRSERMVQLGGDSNYEMGLLPSDIELAEFAADVESLLGRGLDNECMGMEELGLIDAKHEDEEWECSGKVKEEGEEIREVVEGDSNIIDIGKESSFELNFDYETCEEVKEKVGLDIEQNENCNKGKRKMSLQLDYDAVIIAWDGQKCPWTNGDKPNLDVDEIWPDCMGIYGTEVQYPYGELGGYGCNPVMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFAVPTFPLLK 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03568 425 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 11 415 - -
Vivi1g03568 425 ProSiteProfiles CCT domain profile. 371 413 IPR010402 GO:0005515
Vivi1g03568 425 Pfam CCT motif 371 413 IPR010402 GO:0005515
Vivi1g03568 425 MobiDBLite consensus disorder prediction 68 86 - -
Vivi1g03568 425 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Vivi1g03568 425 CDD Bbox1_BBX-like 19 62 - -
Vivi1g03568 425 SMART bboxneu5 15 62 IPR000315 GO:0008270
Vivi1g03568 425 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Vivi1g03568 425 MobiDBLite consensus disorder prediction 67 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03568 Vivi-Chr1 76525995 76527728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03568 6 413 C2C2-CO-like Transcription Factor Family AT1G25440 47.775 1.28e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi1g03568 zf-B_box 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03568 - - psat:127098417 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03568 1 76525995 76527728 Vivi1g03568 1 76525995 76527728 ECH