Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03565 ATGTTGGGTTCTAGAAAATCTAGAGCCAAACCAAGACCTCAATCTTTGAAGGTGACAAGGAAATTGCGGATTGTTTATGATGATCCTTATGCAACTGAATCATCATCCGAAGATGAGTCTCAGCCGAAGCGAGTAAGGCGGGGATGTGTCGAGATGCCTCTTCCTCTTATGCCTGTTGTATCAGCTGTTGTTGAAGTATCAACTCCTCAAAATTCCTTCTATGAAGAGAAGATGGCTGCAAGGAGGAAGAGTTGTCTCTCGATGCGACGAGCTCAAACCACCAAGAAGAGGTCTGTTCCATCTGTTACTCCGACTACAAAGAGACAATCTTCTGCAAAGTACCGAGGAGTTCGAATGAGGAAATGGGGAAAATGGGCCGCGGAGATTCGTGATCCGTTCAAAGGGGCTAGAATCTGGCTTGGAACTTATAACACTGCTGAAGAAGCTTCTCAGGCTTATGAATCCAAAAGGCTTCAATTTGAAATGGAAGCTAAAGCAATGGAAGAAAATGCATGCATCAACCATAACAATAGTTGCTCCATCAACAATAGCAACAATGCACCAGCACCGGCTGCAACTAACTCATCGGCTGATGCTGCTAATGCTTCTGTGTCAGAAAAGTTTTCGACAACAGAAGATTCAGAGATGTTCTCGCATACATCACCTTCGTCCGTGCTTGAATTGGATACTCTAGCCTCCAATGTGACAGAGAAGGTTGAAGATGATGAAATGGTGGCTTGTCAACTTGAAGAGTTAGAAATTCCAGATCTGAGTGTTTTGAACTTGCCCGAGCCTCCTGTTACTGCTGCAGAGAATCCAATTGGAACTGATATCAATTTTGGGTTTGGATTTGATTTTGATCGGTTTAACATCGATGATTTTGGACCAGATTTCGACGATTTTGGTGACTTTAAGGATATTCACATCCATGGCTTCGATGATAATGAGCCTAGTGAACTTCCTGATTTCGATTTTGGAGCTGATGACGATGAATTTGCTGGTTGGATTGAAGAGTCATTCCAACCTAACATATCATGTGTCTAA 1044 0.4291 MLGSRKSRAKPRPQSLKVTRKLRIVYDDPYATESSSEDESQPKRVRRGCVEMPLPLMPVVSAVVEVSTPQNSFYEEKMAARRKSCLSMRRAQTTKKRSVPSVTPTTKRQSSAKYRGVRMRKWGKWAAEIRDPFKGARIWLGTYNTAEEASQAYESKRLQFEMEAKAMEENACINHNNSCSINNSNNAPAPAATNSSADAANASVSEKFSTTEDSEMFSHTSPSSVLELDTLASNVTEKVEDDEMVACQLEELEIPDLSVLNLPEPPVTAAENPIGTDINFGFGFDFDRFNIDDFGPDFDDFGDFKDIHIHGFDDNEPSELPDFDFGADDDEFAGWIEESFQPNISCV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03565 347 MobiDBLite consensus disorder prediction 90 114 - -
Vivi1g03565 347 Gene3D AP2/ERF domain 112 176 IPR036955 GO:0003700|GO:0006355
Vivi1g03565 347 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Vivi1g03565 347 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Vivi1g03565 347 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g03565 347 MobiDBLite consensus disorder prediction 91 112 - -
Vivi1g03565 347 ProSiteProfiles AP2/ERF domain profile. 113 176 IPR001471 GO:0003700|GO:0006355
Vivi1g03565 347 SMART rav1_2 113 167 IPR001471 GO:0003700|GO:0006355
Vivi1g03565 347 CDD AP2 112 153 IPR001471 GO:0003700|GO:0006355
Vivi1g03565 347 Pfam AP2 domain 113 161 IPR001471 GO:0003700|GO:0006355
Vivi1g03565 347 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 236 - -
Vivi1g03565 347 Coils Coil 150 170 - -
Vivi1g03565 347 MobiDBLite consensus disorder prediction 203 222 - -
Vivi1g03565 347 SUPERFAMILY DNA-binding domain 113 160 IPR016177 GO:0003677
Vivi1g03565 347 PIRSF PTI6 291 333 IPR017392 GO:0003700
Vivi1g03565 347 PIRSF PTI6 2 295 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03565 Vivi-Chr1 76276040 76277499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03565 13 346 AP2-EREBP Transcription Factor Family AT1G68550 31.977 5.78e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g03565 AP2 5.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03565 - - tpra:123900395 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03565 1 76276040 76277499 Vivi1g03565 1 76276040 76277499 ECH