Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03557 ATGAAGGTTTTCGTGAAGACTCTGAAAGGAACTCACTTCGAAATCGAAGTCACGCCACAGGACACGATTTCTGATGTGAAGAAAAATATAGAAACTGTTCAGGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTTTGAAGGATGGCTCCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCCTTGTAATTATGCTTTCAAAGAATAAGACTAAATCTGGTGAAGGGTCTACTGCTTCAAATGCTCCTCCAGCAAAGGCCCCACAGGCGAGTTCTGCTCCTACTTCAACCCCCACAGTGTCTGTATCACCTCAAGCTCCAGCTGCAGTTGTCACACAACCTGCATCTGTTGCTGCACCTTCTCCAGCTCCTACTCCTGCTCCTATATCTTCAGCAACTGCTACGGAAGGTTCTGATGTCTATGGGCAGGCGGCATCCAATCTGGTTGCTGGTAGCAACTTGGAGGAAACAGTTCAGCAAATCCTAGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTATCCGTGCTCTCCGAGCTGCCTTCAACAACCCCGAGAGAGCTGTTGAATATTTGTATTCGGGTATTCCTGAACAAGCTGAAGCTCCAGCAGTATCCCAAGTGCCTGCAATTGCGCAGCCTGCGAGTCCTGCTGCTGCAGCTGCAGCTCCACAAGCAGCACAGCCTGCTCCGGTTACATCGAGTGGACCTAATGCTAATCCTCTAGACCTCTTTCCCCAGGGTCTCCCAAATATTGGTGCTGGTGCCGCCGGTGCTGGCTCTCTGGATTTTCTACGCAACAGTCAGCAATTCCAAGCTCTGCGAGCTATGGTGCAGGCAAACCCACAAATACTGCAGCCCATGCTACAAGAACTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGGGATCATCAGGCTGACTTTCTTCGCCTGATTAACGAACCCATGGAAGGTGCCGAAGGGAACCTACTGGGACAAATGGCTGGTGGTATGCCCCAAGCAGTAACAGTCACACCCGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTCGACCGTGCTATTGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAATTGGCGGCCAACTACCTTTTAGACCACATGCATGAGTTTGACGAACAATGA 1191 0.4861 MKVFVKTLKGTHFEIEVTPQDTISDVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGSTLEENKVAENSFLVIMLSKNKTKSGEGSTASNAPPAKAPQASSAPTSTPTVSVSPQAPAAVVTQPASVAAPSPAPTPAPISSATATEGSDVYGQAASNLVAGSNLEETVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEAPAVSQVPAIAQPASPAAAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNIGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPMEGAEGNLLGQMAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03557 396 SMART CBM 268 311 IPR006636 -
Vivi1g03557 396 Pfam UBA/TS-N domain 162 200 IPR015940 -
Vivi1g03557 396 Pfam UBA/TS-N domain 351 386 IPR015940 -
Vivi1g03557 396 SUPERFAMILY UBA-like 334 394 IPR009060 GO:0005515
Vivi1g03557 396 FunFam UV excision repair protein RAD23 B 261 326 - -
Vivi1g03557 396 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Vivi1g03557 396 SUPERFAMILY XPC-binding domain 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vivi1g03557 396 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Vivi1g03557 396 PRINTS DNA repair protein Rad23 signature 345 361 IPR004806 GO:0006289
Vivi1g03557 396 PRINTS DNA repair protein Rad23 signature 377 392 IPR004806 GO:0006289
Vivi1g03557 396 PRINTS DNA repair protein Rad23 signature 362 376 IPR004806 GO:0006289
Vivi1g03557 396 FunFam UV excision repair protein RAD23 homolog 342 390 - -
Vivi1g03557 396 Gene3D - 1 80 - -
Vivi1g03557 396 NCBIfam UV excision repair protein Rad23 1 394 IPR004806 GO:0006289
Vivi1g03557 396 FunFam UV excision repair protein RAD23 homolog 155 205 - -
Vivi1g03557 396 SUPERFAMILY UBA-like 159 212 IPR009060 GO:0005515
Vivi1g03557 396 CDD Ubl_Rad23 1 74 - -
Vivi1g03557 396 CDD UBA1_Rad23_plant 156 205 - -
Vivi1g03557 396 Pfam XPC-binding domain 270 325 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vivi1g03557 396 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 384 - -
Vivi1g03557 396 SMART ubq_7 1 75 IPR000626 GO:0005515
Vivi1g03557 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 160 203 IPR015940 -
Vivi1g03557 396 MobiDBLite consensus disorder prediction 80 118 - -
Vivi1g03557 396 Gene3D - 343 390 - -
Vivi1g03557 396 Gene3D - 261 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vivi1g03557 396 Gene3D - 155 205 - -
Vivi1g03557 396 MobiDBLite consensus disorder prediction 80 142 - -
Vivi1g03557 396 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vivi1g03557 396 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vivi1g03557 396 FunFam UV excision repair protein RAD23 1 80 - -
Vivi1g03557 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 348 389 IPR015940 -
Vivi1g03557 396 SMART uba_6 351 388 IPR015940 -
Vivi1g03557 396 SMART uba_6 162 202 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03557 Vivi-Chr1 76117999 76123054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03557 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 1.90e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03557 K10839 - gmx:100818012 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03557 1 76117999 76123054 Vivi1g03557 1 76117999 76123054 ECH