Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03552 ATGGCCACCGATGGCCACGACTCTCGACGCAAGCATCACCGATCATCCTCTCCGGACGACCACGACAAATCCTCAAAGCGTCATAAGCACCGTCACCATCATAGCCACCGTCATCGCCATGGAAGCAAAAAACGCGACGAGGAGATTCAACACGATGGCGAGATTGTTGCCGCGGTTCCTTCTCCAAGTCCCGTTTCTGATCCTGCTCTGCATAATCATCCCCCTGACGATGATGTTGAGGAGGGAGAGATTCTTGATGACGAGCCTTTGGGCGGTGAGGTTGGAATTGGAAAGAAGCAGATTGAATCTGATGTTGAATCTGGGGAAATTGAGGTGAAAGGAGATCGAGATCTTCGATCTGAGAAGAAAAATCCGGGACTTATTGCTAAAAGTTTGAAAACTGAAAGTGAGGACTTCAACAGTGATAGATTTATTAGGCCTACTTCTGATGCAGACGATGGGAAATGGTGTCAGAGGCATGTTGAATCTCGAAGTCATGAAGATGATGATTCTCCAAACCACTCGAGAGATGAAACTCAAGTTGGGAGGGATGTTCGAGCTGGTACTGATTCTTTGGGCAATGGGTATTTAGATGTTAAGTCTTCTAAAGGGGATAAGTGGCAGAATGGGGAGTTTGGACATTTTAAAGGAAATGAGAAACTAAAAGGTGACTATGATGATGAAGCACTGGAGGCTATTAGAAAGAAAGAAAATTCCCACAAGAATGCCATTGAAAGTGGAGAAGAAAAACATAGAATGCCAGGTAATTCTCCTTTGCACGATGGATACAGAAGTCGATCAAGATCAATTGGCCATACAAGAGACAGGTCTCGTTCTCGCAGTGCTGTAGAAGAGTATGTCCGTCCCAGTAGCAGGCACTCTAGGGAACACGGTTCCCTTTATTACACTAGCAGACATAAGACTGAATATGATCTTGATGAGGAAAGAGTGAGTGCGTACAGAAGGGAGCATCGTCACAGCAGTAAGGATTTGGTAGAGGATGATAAACCGGAACACAGTACTAGGTATGACAGTCGGGATGGCCGGGATAGGGATAGGGCTACCCACAGGAGTAGGGACAGAGATATGGATAGAGATTTGCACAGAGAAAAGAAGCGAGAGGAAACATGCAGGAATAAGGAGGTTGATTGGGTGCGTAGAAGGGAGAAAGAACGTGGAAGGAGCCACGACAGACATAGAAGGGACATTGAAAAAGATAGGAGCAGGGAAAGGGATGAGGGCAGGGATAGGAGAAGAGAAATGGAAAGACATAGGAGCAAAGACACAGTTTATGAGAGGGATAGGAGAAGGGAATTGGAAAGAGATATGAGCAAGGACAGAACAATAGGTGGTGAGAGAGATAGAGACTGGAAGAGTGAATGGGATTATAGGACCCGGGAAAGGGATAACATTAAGGAGAGGGAGAGACGAGATGATAGATATCAACACAATGACAAAGATGTTCCTAATGGTAAGGATAAGCATATGCGTCGTGAGGATGGCAATGACAGTGGGGACAGATATAAGAAACATTCAAGACATGAAGAAAATGGACACCACACAGATAGAAAAAGGAACTATACCATGGAAGAGGATGGAAGGAAACCCAAAGGTGAGGTTGAACAAGATGATGTAGACGAGGATACATTGCAACTACCTGAGCAAGAAGAGGAAGATCTGAACAGAATAAAAGAGGAGAGTAGAAGGAGAAGGGAAGCTATAATGGAAAAATACAAAAAGCAGAATCAGAAATTAGAACAAGCAGCTGGAAATGAAGGAAAAGGCAAGGATGTGGAGATTCATACTGACATTTTTAAAGCAGTTGATGGTAAGAGTGATGATGTTGATAATGTGGAACCATCATTTTCTGTTGGGAAATCTCCACCGGAAAATGTAAATATCGGCTCAGAGAAGGTACTTGGTGCTGGGGGCCTAGGCGAGGGTACTCCTAAGAGTGAAAGGTCAGCTGACAAGTATTGTGATGATATATTTGGTGAGACGCCTACTGGAGTTCGGAAATCGGGAAAAGGAGATGGATTATTAATTGAGAGGGTTGGCCTGCATGACAACTGGGATGATGCAGAGGGCTATTACAGTTATCGTTTTGGTGAAATACTTGATGGCCGATACGAAGTTACTGCTGCACACGGGAAGGGTGTCTTTTCAACAGTTGTACGAGCTAAGAATCTGAAAACTGGTAATGGTGAGCCAGATGAAGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTTTGGATGAGTTGGTCATTTTAAAGAAATTAGTAGGTGCAGATCCGGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGCTTTAAGTATAGAAATCATCTATGTTTAGTTTTTGAATCTCTAAATATGAATCTGCGTGAAGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGGGCATATGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGTAACTGTGGTGTTCTGCACTGTGATATAAAGCCTGACAATATGTTGGTGAATGAAGCCAAAAATGTTTTAAAGCTTTGTGACTTTGGGAATGCCATGTTTGCTGGTAAAAATGAAGTAACACCATATCTCGTGAGTCGCTTTTATCGTGCCCCTGAAATAATTCTTGGCTTGCAGTATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAATTGTATACAGGGAAGGTTCTTTTTCCAGGGCTCACAAACAACGACATGCTACGGCTTCACATGGAATTGAAGGGCCCTTTTCCGAAAAAGATGCTCCGTAAGGGAGCATTTACTGAACAACATTATGACCAGGACCTGAGTTTTCATGCCACAGAGGAGGATCCTGTAACAAAAAAGACCATAAAGAGGATGATTCTTAACATAAAGGCGAAAGATATTGGAACGATCATCACTGGCTCTCCTGGGGAGGATCCAAAAATGTTGGCCAATTTTAAAGATCTTCTAGATAAAATTTTTGTCTTGGATCCGGACAAGAGGTTGACAGTCTCACAAGCATTGAACCACCCATTCATCACTGGCAAGTGA 3087 0.4315 MATDGHDSRRKHHRSSSPDDHDKSSKRHKHRHHHSHRHRHGSKKRDEEIQHDGEIVAAVPSPSPVSDPALHNHPPDDDVEEGEILDDEPLGGEVGIGKKQIESDVESGEIEVKGDRDLRSEKKNPGLIAKSLKTESEDFNSDRFIRPTSDADDGKWCQRHVESRSHEDDDSPNHSRDETQVGRDVRAGTDSLGNGYLDVKSSKGDKWQNGEFGHFKGNEKLKGDYDDEALEAIRKKENSHKNAIESGEEKHRMPGNSPLHDGYRSRSRSIGHTRDRSRSRSAVEEYVRPSSRHSREHGSLYYTSRHKTEYDLDEERVSAYRREHRHSSKDLVEDDKPEHSTRYDSRDGRDRDRATHRSRDRDMDRDLHREKKREETCRNKEVDWVRRREKERGRSHDRHRRDIEKDRSRERDEGRDRRREMERHRSKDTVYERDRRRELERDMSKDRTIGGERDRDWKSEWDYRTRERDNIKERERRDDRYQHNDKDVPNGKDKHMRREDGNDSGDRYKKHSRHEENGHHTDRKRNYTMEEDGRKPKGEVEQDDVDEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQNQKLEQAAGNEGKGKDVEIHTDIFKAVDGKSDDVDNVEPSFSVGKSPPENVNIGSEKVLGAGGLGEGTPKSERSADKYCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGKGVFSTVVRAKNLKTGNGEPDEVAIKIIRNNDTMYKAGLDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHYDQDLSFHATEEDPVTKKTIKRMILNIKAKDIGTIITGSPGEDPKMLANFKDLLDKIFVLDPDKRLTVSQALNHPFITGK 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03552 1028 ProSiteProfiles Protein kinase domain profile. 710 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 555 569 - -
Vivi1g03552 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 265 454 - -
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 25 41 - -
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 636 655 - -
Vivi1g03552 1028 SUPERFAMILY Protein kinase-like (PK-like) 697 1027 IPR011009 -
Vivi1g03552 1028 FunFam Serine/threonine-protein kinase PRP4 homolog 770 1026 - -
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 472 569 - -
Vivi1g03552 1028 Pfam Protein kinase domain 712 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03552 1028 SMART serkin_6 710 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03552 1028 CDD STKc_PRP4 709 1025 IPR044092 GO:0004674|GO:0006468|GO:0045292
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 99 128 - -
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g03552 1028 FunFam serine/threonine-protein kinase PRP4 homolog 681 769 - -
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 472 542 - -
Vivi1g03552 1028 Gene3D Transferase(Phosphotransferase) domain 1 770 1026 - -
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 135 184 - -
Vivi1g03552 1028 Coils Coil 564 591 - -
Vivi1g03552 1028 Gene3D Phosphorylase Kinase; domain 1 681 769 - -
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 204 257 - -
Vivi1g03552 1028 MobiDBLite consensus disorder prediction 1 454 - -
Vivi1g03552 1028 PANTHER DUAL SPECIFICITY PROTEIN KINASE 417 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03552 Vivi-Chr1 76037920 76044427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03552 717 1022 Core Cell Cycle Gene Families AT1G66750 30.599 1.57e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vivi1g03552 Pkinase 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03552 K08827 - gmx:100776908 1384.78