LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g03525	ATGTCTGGAAAAGAAGATAATCGAATCTTTGTTGGTGGATTGGGTTGGGACGTTACCGAACGTCAGCTGGAACATGCTTTTGATCGTTACGGCAAGATTCTTGAATGCCAGATCATGATGGAAAGGGATACAGGACGTCCTCGTGGATTTGGGTTTATTACATTTTCTGACCGTCGGGGAATGGAGGATGCAATTAAAGAAATGAATGGACGGGAAATTGGTGATCGAATCATCTCAGTCAACAAGGCACAGCCTAGGGCTGGGGGTGATGATGCAGACCAAGGGTACAGAGGTGGCTACTCTTCAGGTGGCAGGGGAAGCTATGGGGCTGGAGATAGGGTAGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGAGACGGTGGTCGTGGTCGGGGCAGTGGTTCATTTTCTTCACGTCCTAGATTTGGAGGTACTGGTGGACACGGGGATCGCCTTGGTGAGCGTGAGCGGTACATCGATGACCGTTATGATGGAGGACGTTATGGGGATAGGGACCGTTTAGACAACCGAGACTACAAATATAGTGGCCGTGATCGCTATGCTAGTGACAGGTATGCAACAAGTGGAGGAGATCGATTTGCAAGTGATCGATATGGCAGTGGCTCAGACTACCCGCAAAATGGTTATGGGAAAGAAAGAGGCTATGACCGCTATGGCGGCGCTCGCGGAGGTGCTGATAGAAATGGAAATGGAATACCAGCTCGTGATGAAGGAAGAAGTTATAGGGGCAGGCCTGCTCCTTATGACCGCCCCAGCAGGGCTGCTCGGCCATCATCATTTGACCGTTACTGA	849	0.5112	MSGKEDNRIFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFSDRRGMEDAIKEMNGREIGDRIISVNKAQPRAGGDDADQGYRGGYSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGDGGRGRGSGSFSSRPRFGGTGGHGDRLGERERYIDDRYDGGRYGDRDRLDNRDYKYSGRDRYASDRYATSGGDRFASDRYGSGSDYPQNGYGKERGYDRYGGARGGADRNGNGIPARDEGRSYRGRPAPYDRPSRAARPSSFDRY	282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g03525	282	Gene3D	-	115	143	-	-
	Vivi1g03525	282	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Vivi1g03525	282	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Vivi1g03525	282	PANTHER	SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL	4	274	-	-
	Vivi1g03525	282	Pfam	Zinc knuckle	119	133	IPR001878	GO:0003676\|GO:0008270
	Vivi1g03525	282	MobiDBLite	consensus disorder prediction	136	282	-	-
	Vivi1g03525	282	ProSiteProfiles	Zinc finger CCHC-type profile.	119	133	IPR001878	GO:0003676\|GO:0008270
	Vivi1g03525	282	MobiDBLite	consensus disorder prediction	83	110	-	-
	Vivi1g03525	282	Gene3D	-	2	114	IPR012677	-
	Vivi1g03525	282	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	78	IPR000504	GO:0003723
	Vivi1g03525	282	FunFam	glycine-rich RNA-binding protein RZ1C	1	114	-	-
	Vivi1g03525	282	SUPERFAMILY	RNA-binding domain, RBD	4	111	IPR035979	GO:0003676
	Vivi1g03525	282	SMART	c2hcfinal6	118	134	IPR001878	GO:0003676\|GO:0008270
	Vivi1g03525	282	MobiDBLite	consensus disorder prediction	160	199	-	-
	Vivi1g03525	282	SUPERFAMILY	Retrovirus zinc finger-like domains	103	137	IPR036875	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g03525	Vivi-Chr1	75395877	75400563	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g03525	9	88	C2H2 Transcription Factor Family	AT2G19380	43.750	3.67e-16	76.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g03525	-		-	gmx:100776333	411.764