Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03503 ATGTTTCGGGAGACAATCGCCGTGTCCGCCGCCACGACGCGGTGGGCGAGTCATCATCAAACTCAGTGGACTCGGGACCACGACAAGCTCTTCGAGCGAGCTCTGTTGATCGTGCCGGAGGATTTGCCGAACCGGTGGGAGAAGATCGCCGAGAAAGTTCCGGGGAAGTCGGCGGCGGAAGTTAGGGATCACTATGAAGCTTTGGTTCATGATGTGTTGGAGATTGATTCCGGAAGGGTTGAGGTTCCGAGTTACTCTGATGAATCGGCGGTGAATGAATGGGATTCTTCTAATCAAATTTCGTTTGGTTCGAAGGTTAAACATGGCGGTGGTGATAACGAGAGGAAGAAAGGAACGCCGTGGAGTGAAGAAGAACATAGGTTGTTTCTTATTGGGCTTAGCAAATATGGGAAAGGAGACTGGAGAAGCATATCAAGAAATGTTGTGGTGACCAGAACACCAACCCAGGTAGCTAGCCATGCTCAAAAGTACTTTCTTCGCCAGAACTCGGTGAAGAAAGAGCGAAAAAGATCAAGTATTCATGACATTACTTCTGTAGACAGTGACTCTGCTCCTACCCCTATTGATCAGAACTGGGTTCCTCCTCCCGGTGGTGTTTCAATGCAACAATCTCAAGAAATGCAGCACTATCCATCAAACAATTTTCAAGATCAAATGGGTACATATGGGTATTCAAGTTATGGCTTTCAGATGTAA 717 0.4742 MFRETIAVSAATTRWASHHQTQWTRDHDKLFERALLIVPEDLPNRWEKIAEKVPGKSAAEVRDHYEALVHDVLEIDSGRVEVPSYSDESAVNEWDSSNQISFGSKVKHGGGDNERKKGTPWSEEEHRLFLIGLSKYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITSVDSDSAPTPIDQNWVPPPGGVSMQQSQEMQHYPSNNFQDQMGTYGYSSYGFQM 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03503 238 SUPERFAMILY Homeodomain-like 21 77 IPR009057 -
Vivi1g03503 238 Gene3D - 16 82 - -
Vivi1g03503 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 169 IPR017930 -
Vivi1g03503 238 MobiDBLite consensus disorder prediction 176 195 - -
Vivi1g03503 238 NCBIfam myb-like DNA-binding domain, SHAQKYF class 116 168 IPR006447 GO:0003677
Vivi1g03503 238 ProSiteProfiles Myb-like domain profile. 23 69 IPR001005 -
Vivi1g03503 238 MobiDBLite consensus disorder prediction 101 121 - -
Vivi1g03503 238 FunFam Transcription factor SRM1 15 82 - -
Vivi1g03503 238 Pfam Myb-like DNA-binding domain 120 165 IPR001005 -
Vivi1g03503 238 Pfam Myb-like DNA-binding domain 22 65 IPR001005 -
Vivi1g03503 238 ProSiteProfiles Myb-like domain profile. 113 165 IPR001005 -
Vivi1g03503 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 73 IPR017930 -
Vivi1g03503 238 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 225 IPR043363 -
Vivi1g03503 238 CDD SANT 120 165 IPR001005 -
Vivi1g03503 238 CDD SANT 23 69 IPR001005 -
Vivi1g03503 238 SUPERFAMILY Homeodomain-like 115 170 IPR009057 -
Vivi1g03503 238 Gene3D - 119 171 - -
Vivi1g03503 238 FunFam transcription factor MYB1R1 119 170 - -
Vivi1g03503 238 ProSiteProfiles SANT domain profile. 116 169 IPR017884 -
Vivi1g03503 238 SMART sant 19 71 IPR001005 -
Vivi1g03503 238 SMART sant 117 167 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03503 Vivi-Chr1 74760488 74762324 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g03503 Myb_DNA-binding 2.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03503 - - gmx:548010 365.925