Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03493 ATGGGATCTGAAGCTATGGTTCCAGAATGGGCATCGGAGCCTTGCATAATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTCTTGGTCCCATGGTCTATGGCTGTCTATACTGTCCTCTCTCCTATAAGAAAACCCTAGCTACTTTGAGTTTCGCAGATTCTAAGACTCTGAAAGAAGACAAGAGGGAAGAATTATTTGAAGCTTTGAAAGCCAATGATTCTATTGGATGGGCTGTTGATGTTATTGATCCAAAGGAACTCTCTGCTAAAATGCTCAAGAAGAATAAGATCAACTTGAATGAGATATCACATGACTCTGCTATGGGACTCGTTGATAGGGTACTCAAAATCGGAGTGCTTCTAACCGAGGTTTATATTGATACGGTTGGAGATCCAGGGAAATATGAAGCAAAGATGTCTAAAAATTTTCCATCTATCAAATTTGTGGTTGCTAAGAAAGCTGATAGTCTCTATCCTGTTGTCAGTGGTGCAAGTATAGCTGCAAAGGTTACGAGAGACCGAGCTGTAAGAGATTGGGTGCTCGATGAGACCGCTGATAATATGCTCAGGAACTTTGGCTCTGGATATCCGGGAGATCCCACAACCAAGTCTTGGCTAGAAAATCACAAACATTCTATCTTTGGTTTTCCAACATTGGTCCGGTTTAGTTGGGGAACTTGCAGCACTTATTTTAAAACTGGTGCTGAAGTTTTATGGGAGTCTGACTTGGATGAAGACGGCAACGGCAATAATAGTAATGGCAAACGGCAATTGAAATTGAACAATATGGGTTTCACCACTTCCAAGAAGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGGCGTTCTAGGTTTTTTCAGGCCCGGAAACTTGAGCACCTTACTCATTTCTGA 894 0.4217 MGSEAMVPEWASEPCIMGIDEAGRGPVLGPMVYGCLYCPLSYKKTLATLSFADSKTLKEDKREELFEALKANDSIGWAVDVIDPKELSAKMLKKNKINLNEISHDSAMGLVDRVLKIGVLLTEVYIDTVGDPGKYEAKMSKNFPSIKFVVAKKADSLYPVVSGASIAAKVTRDRAVRDWVLDETADNMLRNFGSGYPGDPTTKSWLENHKHSIFGFPTLVRFSWGTCSTYFKTGAEVLWESDLDEDGNGNNSNGKRQLKLNNMGFTTSKKRSEEIESSGKGRSRFFQARKLEHLTHF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03493 297 MobiDBLite consensus disorder prediction 245 263 - -
Vivi1g03493 297 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Vivi1g03493 297 NCBIfam ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Vivi1g03493 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 284 IPR001352 GO:0003723|GO:0004523
Vivi1g03493 297 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Vivi1g03493 297 FunFam Ribonuclease 1 186 - -
Vivi1g03493 297 FunFam Ribonuclease 188 235 - -
Vivi1g03493 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Vivi1g03493 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Vivi1g03493 297 MobiDBLite consensus disorder prediction 243 263 - -
Vivi1g03493 297 CDD RNase_HII_eukaryota_like 17 236 - -
Vivi1g03493 297 Gene3D - 2 186 IPR036397 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03493 1 297 Core DNA Replication Machinery Family AT2G25100 65.657 3.68e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03493 K10743 - gmx:100779875 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03493 1 74524824 74529196 Vivi1g03493 1 74524824 74529196 ECH