Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03491 ATGGACACTTCAAATCCTGCTGCATTTGTCAATGCCCAAGTTCTTCCCAATTTCATTGGAAAGAAAGTAAGGATTGTGGTTCAGGTGAATCAGTCTGATGGAGCGGCTATCACGGGGAAATCCACTGATGAATCTCAGATAATTGTGAAAGGGTTATCATCACAAGTGCCTGTTTTGAATTATGTTGAGGTTATTGGCATTGCTGAAAGTAGTAACACTATCCGGGCTGAGATATTTACAGACTTTGGTGCCACATTTGATGTCAACTCTTACAATCAGTTATGCCAACTTGCAAATGGTGAATTCAGAAGTCTGTTTCTTTAG 324 0.4012 MDTSNPAAFVNAQVLPNFIGKKVRIVVQVNQSDGAAITGKSTDESQIIVKGLSSQVPVLNYVEVIGIAESSNTIRAEIFTDFGATFDVNSYNQLCQLANGEFRSLFL 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03491 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Vivi1g03491 107 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Vivi1g03491 107 CDD RPA3 6 106 - -
Vivi1g03491 107 Gene3D - 1 107 IPR012340 -
Vivi1g03491 107 Pfam Replication factor A protein 3 1 100 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03491 Vivi-Chr1 74512377 74513651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03491 1 107 Core DNA Replication Machinery Family AT4G18590 62.617 3.95e-46 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03491 K10740 - gmx:100781484 159.458