Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03475 ATGGCTGCTTCATCTTCTTCGGCATCGCTTTTTGGATTCAGAGAAGAGGATCCGAATCAAATGAATCAACAGCAACATTCCTTGCCACCATCATCAGCAACTGCTGCTCCAGCTGCTGCTGCAACATCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATCTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGACAACAAAAGAGCCTAAGAGAAAGGTTTATCTCTGTCCTGAGCCCACATGCGTTCATCATGACCCTTCAAGAGCACTCGGTGACCTCACCGGAATCAAGAAACACTTCTCTCGCAAACACGGCGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCACATTCCAAAACTTGTGGCACAAGAGAGTATAGGTGTGACTGCGGCACTCTTTTCTCCAGGAGAGACAGTTTCATAACTCATAGAGCCTTCTGTGATGCATTGGCTCAAGAGGGTCCAAGACAGCCACCAATAACCCTAACTGGCGCCATTGGATCCCATCTTTTTGGAGGTGGTGGCAGTGGCGGTGGTGGCGGCAACAACAACAGCATGGGTTTAAACTTATCCCAAGTTGCTCCACAAATGGCCAACATGCAACATCAACAAGACCATCACAGCAATTCAGCCACTGAAATTCTGCGACTCGGTGCAGCCGCGAGTCGAACCGGACAGTTCGACCACCACAACATTCTCCAATCCACTTTTAGGCCTAATTCCTTCTTCAACAATAGCATCCATGAGCCAAACCAAAGCTATATCCCTGACCAAGGATTAATGATGCAGCAGAATAATAACAACAGCGGCAACAACACCAATCTCTTCAACATTCCGAATTTCCTTTCGAGTAACAGTACTACTAATACTAACAGTAGCAACAACTCATTCTCTGAACACTTGAATATGAATAATGAAGGGACGAATTTCTTCACTGGATCAGGTGGAACAAGTAGTGCTCCATCACTCTTCAGCAACTGTTTCCCTCAAGCTGGGGGTGGAAACAGTAGCAACAGCAATATTAATGCTGTTACTGCTATATCTTCAATGTCAGCAACTGCACTTCTTCAGAAAGCTGCTCAAATGGGTGCAACTTCAAGCAATGGAAACGGTACTACCGCAACTTCGCTTTTGAAAAGCTTCGGAAACAACACTCCTGCTACTAATTCAGCTTCTTCCGGTGGTGTTGGTGTTGGTGCTGGTGCCAGTGCTGGTGTTGGTGAGCATAATAGAGTTCTGCAGATGGGAGGTGGAAGTGTAAACTACGGTTTTGGTGGTGCGAATAATGATCAGAGTAATTTACAGGACTTGATGAACTCTTTTGCTGCTACTGGAAATACTTCAATATTTGAAACTGGAAGAGGAGGTGTAGGGCTTGGAAGTGGAGGTGCAGATAGCAGTCAACTAACTCGTGACTTTTTAGGAGTTGGTGAGATAGTTAGAAACATGAGCGGTGTTGTTGGAGGACAAAGGGAACAACAACAGAATCATCAACATCAACATGCAGCAGCTGCATTTAACTTGCCAGGTTCCATGGAAGGAGATCATAGAAACATTCATGCTGCACAATCCTTTGGAGGCGGAGGAAGAGGTGGAGCTGGTGGTGGAGCCGGAGCAGGAAATTTTCACTAA 1785 0.4555 MAASSSSASLFGFREEDPNQMNQQQHSLPPSSATAAPAAAATSQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPITLTGAIGSHLFGGGGSGGGGGNNNSMGLNLSQVAPQMANMQHQQDHHSNSATEILRLGAAASRTGQFDHHNILQSTFRPNSFFNNSIHEPNQSYIPDQGLMMQQNNNNSGNNTNLFNIPNFLSSNSTTNTNSSNNSFSEHLNMNNEGTNFFTGSGGTSSAPSLFSNCFPQAGGGNSSNSNINAVTAISSMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNTPATNSASSGGVGVGAGASAGVGEHNRVLQMGGGSVNYGFGGANNDQSNLQDLMNSFAATGNTSIFETGRGGVGLGSGGADSSQLTRDFLGVGEIVRNMSGVVGGQREQQQNHQHQHAAAAFNLPGSMEGDHRNIHAAQSFGGGGRGGAGGGAGAGNFH 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03475 594 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 552 IPR031140 -
Vivi1g03475 594 Gene3D Classic Zinc Finger 128 204 - -
Vivi1g03475 594 MobiDBLite consensus disorder prediction 1 59 - -
Vivi1g03475 594 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Vivi1g03475 594 MobiDBLite consensus disorder prediction 575 594 - -
Vivi1g03475 594 MobiDBLite consensus disorder prediction 1 51 - -
Vivi1g03475 594 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Vivi1g03475 594 SMART c2h2final6 74 96 IPR013087 -
Vivi1g03475 594 SMART c2h2final6 150 170 IPR013087 -
Vivi1g03475 594 SMART c2h2final6 115 145 IPR013087 -
Vivi1g03475 594 FunFam protein indeterminate-domain 12-like 53 121 - -
Vivi1g03475 594 Gene3D Classic Zinc Finger 53 122 - -
Vivi1g03475 594 Pfam Zinc-finger double-stranded RNA-binding 74 96 IPR022755 -
Vivi1g03475 594 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Vivi1g03475 594 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03475 Vivi-Chr1 74334215 74339890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03475 44 552 IDZ Gene Family AT2G02070 47.849 8.19e-128 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g03475 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03475 K25870 - gmx:100799389 544.658