Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03462 ATGAGTTCTAGCTGTGGTGGAAGAGAAGGTGTAGGAGGAGCAGTGAGACAGTATATAAGATCAAAAGTCCCTCGTTTGAGATGGACTCCTGAACTTCACCGTTGCTTTGTTAACGCCATTCACACCCTTGGAGGCCATCATAAGGCTACTCCTAAACTTGTTCTTCAGCTCATGGATGTCAAAGGCCTCACCATTTCACATGTCAAAAGCCATCTTCAGATGTACAGAAGCATGAGAGGTGAAATGGGAAAACAAGGTAGGACAAGTTCACAACATAGAAACCAATGTTTTGAAGAGCATGATGATGGATGTGTTGATGAAATGAATGAACATTCTTGTTCAAAACAACTCATGAGAGAAGAATCAGATTCCTTCCTTGGCAACAGTAATATCTTCTCTAAAAGAGCTAGAATCGAGACAAGTTCTACAACGAGTCTGGTGCAATGCAGCGAAAGAAGAAGAAGAATATGTGCTGATGATGATGATGGTGGTGCAGTAACAATAACAAATCCGTACTGCTTTTATGACCATGAACTGCTGCACAAGAAAAAAGGAATAAAGGATGAAGAAAAGTTTTATGGATGGCAGAGAAAGATTCAACCACATTTTGATTTTGGCATCACTTCTTTCAAATCTCCAAACCAACCACAATCTCATTTCTCTCAGGTTGGTAATGGAAATGGGAATGAGAAAAAGAGGGGTTCATGGTCAATGAAAGGAGTTATGAAAACTGACAAAGCACATGTAGAAGTTGAAAGTGTAGGAGGAGATGAGTTGTCATTGTCACTAACATTGCAAAATGGTTCAGCTCAGACAAGTAATGGTTGTTATTCGGCAAGTGAAATCAGTGAGGCAATTTCATGCTGGACAACACCTCCTAAAGACTGCTATAGAACATCTAGTGTTAAAGAAAAGATTAATTTAGACCTATCTTTAGCCATTTGTGGTAATTGA 954 0.3941 MSSSCGGREGVGGAVRQYIRSKVPRLRWTPELHRCFVNAIHTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGEMGKQGRTSSQHRNQCFEEHDDGCVDEMNEHSCSKQLMREESDSFLGNSNIFSKRARIETSSTTSLVQCSERRRRICADDDDGGAVTITNPYCFYDHELLHKKKGIKDEEKFYGWQRKIQPHFDFGITSFKSPNQPQSHFSQVGNGNGNEKKRGSWSMKGVMKTDKAHVEVESVGGDELSLSLTLQNGSAQTSNGCYSASEISEAISCWTTPPKDCYRTSSVKEKINLDLSLAICGN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03462 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 80 IPR017930 -
Vivi1g03462 317 MobiDBLite consensus disorder prediction 216 232 - -
Vivi1g03462 317 MobiDBLite consensus disorder prediction 216 235 - -
Vivi1g03462 317 FunFam Myb family transcription factor 22 80 - -
Vivi1g03462 317 Pfam Myb-like DNA-binding domain 26 76 IPR001005 -
Vivi1g03462 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 24 77 IPR006447 GO:0003677
Vivi1g03462 317 Gene3D - 23 79 - -
Vivi1g03462 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 13 111 IPR046955 GO:0003700
Vivi1g03462 317 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03462 Vivi-Chr1 74218416 74221407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03462 5 79 G2-like Transcription Factor Family AT1G14600 73.684 9.99e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi1g03462 Myb_DNA-binding 6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03462 - - vvo:131609645 659.833