Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03456 ATGAATGAGATTTCGTCTTCCACAAATGTCACTCAAGATGTTGGTTCTTACTCCGATGAAAATAAAGAATCCTGGCAACATTTTATCTTCCACGACCTTTCATCAATCAAGGATATCTACGCTCATGAAAAGGGATTTTCTTTGAGAAGAAATTTGCATTCCTTCTATGATTCTCGTAACAAAAAAACTGACATTGTGCAATATGTCCGTTATGTTTGTAACAAGCATGGTTTCAAGCATAGGAGTCGGGCGGATCCTAAGAACAAGACAAACTCGGATACTCCTGTTCTCATTGAATTTCAGAAAGAGAAAGAACTTCCCGAGGAAAGGACTGGTTGTCCTGCTAGTATTTCATTGAAGTATGATTCCAATGTTAAAGGTTATCAGATATACAAATGGAATGTTCCTCATAACCACCCTCTCCATAAACCCGAGCATTCGCATTACTTGAGATCGGCTTGA 462 0.3853 MNEISSSTNVTQDVGSYSDENKESWQHFIFHDLSSIKDIYAHEKGFSLRRNLHSFYDSRNKKTDIVQYVRYVCNKHGFKHRSRADPKNKTNSDTPVLIEFQKEKELPEERTGCPASISLKYDSNVKGYQIYKWNVPHNHPLHKPEHSHYLRSA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03456 153 Pfam FAR1 DNA-binding domain 40 142 IPR004330 -
Vivi1g03456 153 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 40 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03456 Vivi-Chr1 74115552 74116013 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g03456 FAR1 2.1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03456 - - vvo:131636111 298.13