Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03439 ATGCTTCTTCCTATGAGTTGCATTCTTTTAATATGTCTCTTGAGTTCTTTCTCCATCCAAATCAAAGCCACTAAAACCTTTTCAAATCTCACCTTACCCCACCAACATCCTTACCCTGAAGCTGTGGTTCATGAACTTCAACAGAAAATCAATGTGTCACTTTTTAGAAGAGAACTACTCGGAAAAACACAAGGCGGATGTTTAACTGGAAATCCAGTAGATGATTGCTGGCGCTGCGACGCAAACTGGGCGGCGAACCGTCAGAAGTTAGCAGAATGCGGAATCGGATTCGGACGCGCCGCCATGGGAGGTAAAAACGGCCAGATCTATGTTGTTCATGACTCCTCCGACTCCGACCCGGCGAATCCCGTTCCAGGCACACTCCGTCACGCGGTTATCCAAGACGAACCTCTCTGGATAATCTTCTCCGCCGACATGACGATAAACCTCCGCCACGAGCTTATCTTCAACAGCTTCAAAACCGTCGACGGCCGCGGCGCGAACGTTCAAATCACCGGTCACGGTTGCATCACACTCCAATATATCTCAAATGTTATCATCCACAACATCCATGTTCATCACTGTAAACCCTCCGGGAACACTAACATACGCGCGAGTCCAACGCATGTAGGGTTCAGAGGAATTTCCGACGGTGACGGAATATCAATCTTCGGTTCTAGAAACATCTGGATCGACCATTGCTCGTTATCTTACTGTACCGACGGATTAATCGACGCTATAATGGGGTCCACTGCTATAACGATTTCGAATAACCATTTTGGTCATCACGATGAGGTTATGCTTCTAGGGCACAACGATAAATATACTCCTGATAGAGGAATGCAAGTTACGATTGCGTTTAATCACTTCGGAGAAGGACTTGTTCAGAGAATGCCACGGTGCAGACTCGGTTACATCCATGTCGTTAACAACGATTTCACGCAGTGGAAAATGTATGCTATCGGTGGTAGTGCTAACCCTACTATCAACAGCCAGGGTAACCGTTACACCGCCCCCTCTGATCCAAACGCGAAAGAGGTGACTAAGCGCGTGGAGACAGATGATAAAGAGTGGAGTGATTGGAATTGGAGGACGGAAGGAGACGTAATGGTAAACGGAGCGTTTTTCGTGCCGTCGGGAGGTGGGATGAGTGCACAGTACGCGGAGGCGTCGAGCGTGCAACCCAAGTCCGCTGTGCAAATCGATCAGCTCACCATGTACTCCGGTGTTTTCGGTGATCCCAGGGATAATGGAGATATATATCCCGGTTTCAACGGCGCCGGGACCACGACTGGAGCCACCAGCAAGGGCTACAATGAGGGACCCAGCAGTGACGGTGGAGACTTCTTTGGTATGATATTCAAAGGCAGTAGCAGCCAAGCAGCACCACCAGCACCATACTCATCAATTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTCAATTTGGACATTATCACCAACTATGATATTCTATTATCATTATTATGA 1497 0.4743 MLLPMSCILLICLLSSFSIQIKATKTFSNLTLPHQHPYPEAVVHELQQKINVSLFRRELLGKTQGGCLTGNPVDDCWRCDANWAANRQKLAECGIGFGRAAMGGKNGQIYVVHDSSDSDPANPVPGTLRHAVIQDEPLWIIFSADMTINLRHELIFNSFKTVDGRGANVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFGHHDEVMLLGHNDKYTPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWKMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVETDDKEWSDWNWRTEGDVMVNGAFFVPSGGGMSAQYAEASSVQPKSAVQIDQLTMYSGVFGDPRDNGDIYPGFNGAGTTTGATSKGYNEGPSSDGGDFFGMIFKGSSSQAAPPAPYSSIVFVSTFLSLLIIFNLDIITNYDILLSLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03439 498 SMART amb_all 145 342 IPR002022 -
Vivi1g03439 498 FunFam Pectate lyase 70 412 - -
Vivi1g03439 498 Gene3D - 70 412 IPR012334 -
Vivi1g03439 498 PANTHER PECTATE LYASE 18-RELATED 32 411 IPR045032 GO:0030570
Vivi1g03439 498 SUPERFAMILY Pectin lyase-like 65 387 IPR011050 -
Vivi1g03439 498 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Vivi1g03439 498 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Vivi1g03439 498 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Vivi1g03439 498 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Vivi1g03439 498 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Vivi1g03439 498 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Vivi1g03439 498 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Vivi1g03439 498 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Vivi1g03439 498 Pfam Pectate lyase 153 334 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03439 Vivi-Chr1 73906675 73911795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03439 23 417 Polysaccharide Lyase AT3G54920 66.993 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03439 K01728 - gmx:100808438 830.091