Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03432 ATGCTTATCCAACAACAACAACAGAAAAAAAAGAAGTTTATTCATTTTCTAACTTCAATGTCTTCTTCACCATATTTAAATTTCACTCTCCTCTTAATATACTATTTCACATCACCAACACTTTCTTCTGATCCCGGAGCAACAAAAGTTCTTTTACTATGCACAAACAAAACCGCAGCCTCAATGCCATTCCGCAAACTTTTCATATCAAACTTCCTCTCAGCAATGGACTCATTAACTCCCTTAATCTCAAAACAACGATACGCCGCCGTTTCAAACGGAGCGCGTAACGCCACTGTCTTCGCCTACGGCGAGTGCATAAAAGACCGCTCTCAATCAGATTGTAACATCTGCATAGCACAGTGCAAAACACAGATACTAAGCTGTTTGCCTTTTCAGAAAGGTACACGTGGAGGAAGGTTGTTGTTCGACGGTTGTTACCTTAGGTACGATGAATACAGTTTCTTTAACGAGAGTCTTGGTAATCAAGACTCGACCGTGTGTGGAAATGAAACTAGGAATAGTGTTTATGAAGGTAATGTTTTGGAGTTGGTGAGGAATTTGAGTGTGTTGGCGCCGAAAAACGATGGATTTTCGGTTGGTTTTGTTGATAGGAAGAATGTAACGGTTTATGGTTTGGCTCAGTGTTGGAAGTTTGTTACTGGTGGTAACTGTCGTAGATGTTTGGAAGATGCTGTTACTAGGATTGGTTCTTCGTGTCGGAGTAAAGAAGAAGGTAGGGCTTTGAATTCTGGTTGTTATTTGAGGTATTCACCAAACAAGTTCTATGACAATTCAACTACTAGTGATGTAACTGCTGGAAATCACGGACACCGAAAAATGGCTATAATTTTGGCTGCGTCTTCAGCTGTCTTGGCTCTTCTTTTGGTTGCTGCAACAATGGTTTTCTTTATAAGAAAGAATGTAATGAGGAAAAGAAGAGAGAGAAAACAATTTGGGACACTTTTGGACACAGTGAACAAATCCAAGCTAAATGTTCCATATGAAATTCTTGAAAAGGCAACAAATTACTTCAATGATGACAATAAACTAGGACAAGGAGGATCAGGTTCAGTTTATAAAGGAGTTATGCCAGATGGAAATACTGTGGCTGTTAAAAGGCTTAGTTTTAACTCGACGCAATGGGTGGATCATTTCTTCAATGAGGTTAATTTGATTAGTGGAGTTCATCACAAAAATCTTGTCAAGCTTTTGGGATGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTGCCTAACCAGAGCCTCTATGATTACCTATCTGTTAGAAGGATTTGTCAACCTCTTAGTTGGGAAGTGAGGTACAAGATCATATTGGGAATTGCAGAAGGCCTGGCTTACCTTCATGAAGAATCACATGTGAGAATCATTCATAGAGATATAAAATTAAGCAACATTCTTCTTGAGGACGATTTCACACCCAGGATTGCTGATTTTGGACTAGCTAGATTGTTTCCAGAAGACAATTCTCACATAAGCACGGTTGTCGCTGGGACACTGGGTTATATGGCTCCTGAGTACGTAATTCGCGGGAAATTGAGTGAGAAAGCAGATGTTTATAGCTTTGGAGTTCTAGTTGTCGAAATTGTATCCGGCAAAAAAAACAGCTCCTATGTTCTGAATTCATCTTCTATCCTACAAACGGTTTGGAATCTTTATGGATCAAATAAGCTAACTGACATAGTCGATCCAATCCTAGAGGGAAACTTTTCTGCCGACGAAGCATGCCTAATGCTTCGGATAGGATTGCTTTGTGCACAAGCAACTGCAGAGTTGAGACCTTCAATGTCAGTAGTTGTTAAAATGATTAATAACAATCATGAAATTTCTCAGCCAACGCAACCTCCCTTTATTTATTCGAGTAGCTCTGAACTCAGCAAATCGGTTTCACAAAGACGACGTAATTTTCTTCCACAATCCAACACTCAATCTTCAGGCGATACAATGACCGAAAGCTTGGTTGACCCTAGCATGGAATTGTCCTTACTTAAATCTCCTAATTGA 2034 0.3963 MLIQQQQQKKKKFIHFLTSMSSSPYLNFTLLLIYYFTSPTLSSDPGATKVLLLCTNKTAASMPFRKLFISNFLSAMDSLTPLISKQRYAAVSNGARNATVFAYGECIKDRSQSDCNICIAQCKTQILSCLPFQKGTRGGRLLFDGCYLRYDEYSFFNESLGNQDSTVCGNETRNSVYEGNVLELVRNLSVLAPKNDGFSVGFVDRKNVTVYGLAQCWKFVTGGNCRRCLEDAVTRIGSSCRSKEEGRALNSGCYLRYSPNKFYDNSTTSDVTAGNHGHRKMAIILAASSAVLALLLVAATMVFFIRKNVMRKRRERKQFGTLLDTVNKSKLNVPYEILEKATNYFNDDNKLGQGGSGSVYKGVMPDGNTVAVKRLSFNSTQWVDHFFNEVNLISGVHHKNLVKLLGCSITGPESLLVYEYVPNQSLYDYLSVRRICQPLSWEVRYKIILGIAEGLAYLHEESHVRIIHRDIKLSNILLEDDFTPRIADFGLARLFPEDNSHISTVVAGTLGYMAPEYVIRGKLSEKADVYSFGVLVVEIVSGKKNSSYVLNSSSILQTVWNLYGSNKLTDIVDPILEGNFSADEACLMLRIGLLCAQATAELRPSMSVVVKMINNNHEISQPTQPPFIYSSSSELSKSVSQRRRNFLPQSNTQSSGDTMTESLVDPSMELSLLKSPN 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03432 677 MobiDBLite consensus disorder prediction 640 665 - -
Vivi1g03432 677 FunFam Cysteine-rich receptor-like protein kinase 3 164 262 - -
Vivi1g03432 677 Pfam Salt stress response/antifungal 168 258 IPR002902 -
Vivi1g03432 677 Pfam Salt stress response/antifungal 63 153 IPR002902 -
Vivi1g03432 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vivi1g03432 677 ProSiteProfiles Gnk2-homologous domain profile. 159 262 IPR002902 -
Vivi1g03432 677 Gene3D Transferase(Phosphotransferase) domain 1 421 626 - -
Vivi1g03432 677 FunFam Cysteine-rich receptor-like protein kinase 2 421 621 - -
Vivi1g03432 677 SUPERFAMILY Protein kinase-like (PK-like) 331 642 IPR011009 -
Vivi1g03432 677 ProSiteProfiles Gnk2-homologous domain profile. 48 155 IPR002902 -
Vivi1g03432 677 FunFam Cysteine-rich receptor-like protein kinase 2 311 420 - -
Vivi1g03432 677 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Vivi1g03432 677 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 102 646 - -
Vivi1g03432 677 Pfam Protein kinase domain 346 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03432 677 SMART serkin_6 345 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03432 677 ProSiteProfiles Protein kinase domain profile. 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03432 677 MobiDBLite consensus disorder prediction 640 677 - -
Vivi1g03432 677 Gene3D - 163 262 IPR038408 -
Vivi1g03432 677 Gene3D - 47 155 IPR038408 -
Vivi1g03432 677 Gene3D Phosphorylase Kinase; domain 1 305 420 - -
Vivi1g03432 677 CDD STKc_IRAK 351 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03432 Vivi-Chr1 73731519 73734818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03432 38 510 Receptor kinase-like Gene Family AT1G70530 60.377 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g03432 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03432 - - gmx:100305402 926.391