Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03419 ATGGCAGAAGAAACCTTTAGAGATGATTCGCAAGAAAGACATCTTGGTCGATTAAAAGATCAAGTTCGTTTGGTTAAAAAGAAAAACTGCGAACGCTATGAGGTTGCTCCAATCAAAGACAAACTATCATTTGAGAATGGTTTTTTTACAGTATTCCATGCATGTCAGTTGTTGGTCCAGAAAAACGATGGAATGATATTAATAGGAATTGGGGGTCCTTCGGGGGCTGGAAAGACTGTGTTGGCTGATAAGATATTCAACTCTATGCCTGACATTGCTGTTATTTCAATGGACAATTACAATGATTCTAGTCGAATTGTCGATGGAAACTTTGATGATCCACGTTTAACAGACTATGAAACATTGCTCCGAAATGTATGTGATTTAAAGGCAGGAAAGCCGGTTGAAGTTCCTGTGTATGATTTCAAATCCAGTTCACGTACGGGATACAGGACGGTCGAAGTTCCGAGCTCTCGTATCGTGATTATAGAGGGCATTTATGCTTTGAGTGAAAGGTTAAGACCTCTACTGGACCTTCGAGTATCTGTGACAGGAGGCATTCATCTTGACCTCATCAAACGAGTTATACGCGATATACAACGTGCTGGTCAAGAACCTCAAGAAATCATTCATCAAATATCTGAGACGGTATATCCAATGTACAAGGCTTATATTGAGCCAGATCTCCAAACAGCGCATATAAAAATAACCAACAAGTTTAATCCATTTGTTGGATTCCAAAGCCCTACTTATATATTAAAGTCGACCAGGAATGTATCGGTGGATCGGATTAAAGCTGTTCTCTCCCAAGATTTTGAGGAAGCAACTGAGCAGACTTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAGAGCTGTCAATCATATTTACGGATGCGAAATAAAGATGGGAATTACAGTCTCATGTTTGAGGAATGGGTGACTGATGATCCGTTTGTCATATCACCAAGAATTACTTTTGCGGTCAGTGTGCGTCTTCTTGGTGGACTTATGGCCCTTGGATATACAATAGCAACTATCCTTAAAAGAAGCAGCCATATCTTATCTGATGACGGGGTTTGTGTTAAACTAGATTGGCTTGAGCAACTAAATCGACATTATGTTCAGGTACAGGGGACAGATCGATTAGTTGTATCATACGTAGCACAACAAATGGGTTTGGAAGGTTCATACATTCCCCGTACGTATATTGAGCAGATTCAACTTGAAAAGCTTGTAATGGCCATGCCAAATGACTTAATAAGGAGAAAGCTCAACCTTACTGAGGATTTGGTGTCAAGCCCTAACACAGCACATTTTAGAACCTCTAGTGATGGGGCTTCCATGAGACATAAGCGTATCAGAAGTGATATGTCACAGTCATTTACAAATCAAAAGGATGAAAATCAAGCCAAAGTAACTGGATTCGTGCCGAACAATCGAAGACTTCATGAAAAAAATAGTTCAGATTCCGAAACGAAACTGGAAAATCAGGGTGCCATCACTCAGCTTTCAGAACAAATTGCATCCCTGCATGATAGAATGGGCGAATTTGCATATCGTATTGAAGAGCTGAACTCTAAGTTAACCACAAACGAAAATTGTCCAAACCAACAAAACATGGTCCTGCAATCTGAGTCCTGTGATGGCTCTGCTCCCACCTCTTACATCATCACTTGTTTGAGTAATGGTTCCCTAACTGGATCTATAATGCCGAATTCCTCATTCCAATCACAATTAGCTAAGGAGACACCTTTAAGAGATGAGATATCAGGTATCGCAGAGGTTCAACGCCATATAATGAATCAGTTGGACAATTTGAATAATATTTTCTGTAGGAATTTGGAAGAGAAGCCTCATCAAACAAGAACCAACTGGAAAAGTGCTGCTGCATCTTCTTCTTCAGATGCCGGTGGACGTCATATAATAGTAGCAGTGGCTATTGGTTGTTTAAGCATCTTCGTAATGAAGGGTTTGTTAACCTGA 1989 0.4022 MAEETFRDDSQERHLGRLKDQVRLVKKKNCERYEVAPIKDKLSFENGFFTVFHACQLLVQKNDGMILIGIGGPSGAGKTVLADKIFNSMPDIAVISMDNYNDSSRIVDGNFDDPRLTDYETLLRNVCDLKAGKPVEVPVYDFKSSSRTGYRTVEVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGIHLDLIKRVIRDIQRAGQEPQEIIHQISETVYPMYKAYIEPDLQTAHIKITNKFNPFVGFQSPTYILKSTRNVSVDRIKAVLSQDFEEATEQTYDIYLLPPGEDPESCQSYLRMRNKDGNYSLMFEEWVTDDPFVISPRITFAVSVRLLGGLMALGYTIATILKRSSHILSDDGVCVKLDWLEQLNRHYVQVQGTDRLVVSYVAQQMGLEGSYIPRTYIEQIQLEKLVMAMPNDLIRRKLNLTEDLVSSPNTAHFRTSSDGASMRHKRIRSDMSQSFTNQKDENQAKVTGFVPNNRRLHEKNSSDSETKLENQGAITQLSEQIASLHDRMGEFAYRIEELNSKLTTNENCPNQQNMVLQSESCDGSAPTSYIITCLSNGSLTGSIMPNSSFQSQLAKETPLRDEISGIAEVQRHIMNQLDNLNNIFCRNLEEKPHQTRTNWKSAAASSSSDAGGRHIIVAVAIGCLSIFVMKGLLT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03419 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 239 IPR027417 -
Vivi1g03419 662 Pfam CYTH domain 269 404 IPR023577 -
Vivi1g03419 662 SUPERFAMILY CYTH-like phosphatases 266 407 IPR033469 -
Vivi1g03419 662 Gene3D - 65 249 IPR027417 -
Vivi1g03419 662 CDD UMPK_like 67 239 - -
Vivi1g03419 662 Pfam Phosphoribulokinase / Uridine kinase family 67 236 IPR006083 GO:0005524|GO:0016301
Vivi1g03419 662 PANTHER URIDINE KINASE 35 413 - -
Vivi1g03419 662 PRINTS Uridine kinase signature 65 82 - -
Vivi1g03419 662 PRINTS Uridine kinase signature 188 198 - -
Vivi1g03419 662 PRINTS Uridine kinase signature 224 237 - -
Vivi1g03419 662 PRINTS Uridine kinase signature 132 147 - -
Vivi1g03419 662 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03419 Vivi-Chr1 73521281 73525267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03419 66 236 PRT Gene Family AT5G40870 28.333 2.67e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03419 K00876 - gmx:100781286 957.207