Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03408 ATGCAGGCCGATGCGGAAATCTTGATTGATTTTAACACTCAACTTCATTCTGAGACTGTTGTTTCGGTTCAAAATGGGGATCCGGGTGTTTCGACATCTCTTGCAAATGATGTTGTCATGCCTCAGCAGCCAGCTCCGAAAAAACCAACGAGGCAGTGGGCTGCTTGGACTCGTCAAGAGGAGGAAAGCTTCTTCACCGCATTACGACAAGTTGGAAAGAATTTTGAGAAAATCACTTCCCGTGTACAAAGTAAAAACAAGGATCAGGTTAGGCATTATTACTATCGGCTTGTGAGACGGATGAACAAACTTCTTGGTCCAGAATTATGCCTGGATGCCAAAAACTCAAAAGATACTAATGCGGCAATGCTTCGCTGGTGGTCTTTATTGGAAAAGTATAGCTGCAAAGCCTCAAAACTTCATCTAAAGCCCCGGAGGTTTAAAATATTTTTAGAAGCCTTGGAGCACCAACTTTTGAAGGACCGGAAGAAGAATATAAAGAAGCGACCTTTGCAGGGTGGAAATTGTCAATCTCCTGCTCTTAACACTATCTCAAATCAGTCAAATACCCGTGCAGTTAAAATGATTCTTGTTGAGAGTCAAAATATCATAAAACTTGGACCTTCAAAACCACCATTGAAGCGCAATGTGAACATGGGTGTTAACCGCAGTAATGCTAAGGGAGATTCAAATAACTCAAAACCTACAAGGCAGCGGAAGAAATCTGCAGCTGCATATAGAAAATGGGAGAAGGCTGCAATTGCTGGAGTCTCTTTAGTTGCAGATGCTGCTGAGCATTTGGAGCGAGCTGCCACTGTTAAAGAGGCTGAACATGACCAGGAGAATCCCGGTAGCTATCACAGTGGAGGGAAAAAATGTTCTGATCCTGCCGATCATGTCCTTCCCTCTTTACCCACATTTCCACAAAATCACTATGTTGATAACAATGTACAGAATACTGTGAAACTTAAGCTCCAATTATTCCCAATTGATGAACCCACTCGAAGAGTCTTGGAAATGGAGAAGCATAATCCATTCTTGGAGCTTACTCTTAGTACACGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGCAAATGGGGCAATTCAAGCATAGCAGTTGGAGAGTTGATGCTTTTTCCTTATGGTGTTCAAAAGGAAAACTTGAATATTTATCAAAGATGGAACCAGGAATCTACTCTTAGTGCCGCAGATATATATGCAGTGATAGGAAGTCCGCCTATATTCCGTTTAAGGTATGGTTGGTTCTCTAATGCTGAGCACGGGACATTAAATATGCAAACCCCTGTAGCATCCAGTTACATAGTTAGACAGTCCAAAAACGGTGATGATAATATGATGGATCAGATTGTGAATTTGACATCGCTTCCTATGCCATCAACTAACAATTACTCTACGGAGTGCTCTGTAAATTGTGAAACATCCATGAACAAAAGCAACGCTCTTACCTCTACTTCAACTTATTTGCCTAACACTATAGACGGAAGTATATACCAGAATACAAGTACTGAGGAACCTTGTGGACCTACAGCCCATATATCATTGCATGGAAAAGATGTGACTGATGGAGCTGTATCTAGACAGTTGGAAGACATGGAGGAGTTGAAATCAAACAGTGGATCTGGCCTGTCGGCTGGTGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGATCTACTATCAGGAGTCTCCCAGGATCTCAATGATAACTGCATTGATCCTCTAATTGCTGAGAATTGTCGTAGTGTTCATCAAATTCCTTTTAGTAGTGATTCTTTTGATGCTGCTATTGCTGCTCACATATCTAAACACCAAGACAAGATGGGACAATCAACTATGGTATCTCATATGTCATCCATCTGGGATGCTGAAGAAACTTGTGATGCTTTCTCATTTAAAAAACATCCTATTCGTCATGAAGATGGTCCTTGTTTTTCTCTCACTGCTGCTTTAGATTCTGATAAAAAGGTCCTTGAAAGAAGCTTTGACAATTTGGATAAGCTTTCACCTGAAAAAGAGAGCCTTGTGGATGATATTGCTCAAACAGACCATATGCCTATGGACAGTTGTGAGGCCGGTGCAGATATCAAGTATCATTTAGCAAAGGATTTTACTGGGATAGCAGATATGTATTGGCCTGATTCTTTGGGACCGCTTGATTTGGAAATACCATCTACTAAGTACAACAGTGATGATCCAATTTTAAGTGATAGTCTTAGTGGACTGAATCGCTTGATAGCCAGCAGCCTGGATGCATTCCAGAATTGCTCCTTTTTTGGGATTGACAAGAAGGAAACACCATCGACAGTTGAGGCTCAAGAAACTGCCACTCTCTCAGATTTTAAAATTGGAAGTGGTATTTGA 2391 0.4124 MQADAEILIDFNTQLHSETVVSVQNGDPGVSTSLANDVVMPQQPAPKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPELCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFLEALEHQLLKDRKKNIKKRPLQGGNCQSPALNTISNQSNTRAVKMILVESQNIIKLGPSKPPLKRNVNMGVNRSNAKGDSNNSKPTRQRKKSAAAYRKWEKAAIAGVSLVADAAEHLERAATVKEAEHDQENPGSYHSGGKKCSDPADHVLPSLPTFPQNHYVDNNVQNTVKLKLQLFPIDEPTRRVLEMEKHNPFLELTLSTRKKISSILEHLNRKWGNSSIAVGELMLFPYGVQKENLNIYQRWNQESTLSAADIYAVIGSPPIFRLRYGWFSNAEHGTLNMQTPVASSYIVRQSKNGDDNMMDQIVNLTSLPMPSTNNYSTECSVNCETSMNKSNALTSTSTYLPNTIDGSIYQNTSTEEPCGPTAHISLHGKDVTDGAVSRQLEDMEELKSNSGSGLSAGEWADSLTNISVGDLLSGVSQDLNDNCIDPLIAENCRSVHQIPFSSDSFDAAIAAHISKHQDKMGQSTMVSHMSSIWDAEETCDAFSFKKHPIRHEDGPCFSLTAALDSDKKVLERSFDNLDKLSPEKESLVDDIAQTDHMPMDSCEAGADIKYHLAKDFTGIADMYWPDSLGPLDLEIPSTKYNSDDPILSDSLSGLNRLIASSLDAFQNCSFFGIDKKETPSTVEAQETATLSDFKIGSGI 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03408 796 FunFam TSL-kinase interacting protein 1 56 117 - -
Vivi1g03408 796 ProSiteProfiles Myb-like domain profile. 48 98 IPR001005 -
Vivi1g03408 796 MobiDBLite consensus disorder prediction 218 232 - -
Vivi1g03408 796 SUPERFAMILY Homeodomain-like 48 102 IPR009057 -
Vivi1g03408 796 MobiDBLite consensus disorder prediction 272 295 - -
Vivi1g03408 796 Gene3D - 9 105 - -
Vivi1g03408 796 ProSiteProfiles SANT domain profile. 56 102 IPR017884 -
Vivi1g03408 796 Pfam Myb-like DNA-binding domain 55 97 IPR001005 -
Vivi1g03408 796 FunFam TSL-kinase interacting protein 1 16 105 - -
Vivi1g03408 796 CDD SANT 55 98 IPR001005 -
Vivi1g03408 796 PANTHER CRAMPED PROTEIN 37 769 - -
Vivi1g03408 796 SMART sant 52 100 IPR001005 -
Vivi1g03408 796 MobiDBLite consensus disorder prediction 208 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03408 Vivi-Chr1 73392318 73399176 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g03408 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03408 - - psat:127074900 1535.78