Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03406 ATGCAGGCCGATGCGGAAATCTTGATTGATTTTAACACTCAACTTCATTCTGAGACTGTTGTTTCGGTTCAAAATGGGGATCCGGGTGTTTCGACATCTCTTGCAAATGATGTTGTCATGCCTCAGCAGCCAGCTCCGAAAAAACCAACGAGGCAGTGGGCTGCTTGGACTCGTCAAGAGGAGGAAAGCTTCTTCACCGCATTACGACAAGTTGGAAAGAATTTTGAGAAAATCACTTCCCGTGTACAAAGTAAAAACAAGGATCAGGTTAGGCATTATTACTATCGGCTTGTGAGACGGATGAACAAACTTCTTGGTCCAGAATTATGCCTGGATGCCAAAAACTCAAAAGATACTAATGCGGCAATGCTTCGCTGGTGGTCTTTATTGGAAAAGTATAGCTGCAAAGCCTCAAAACTTCATCTAAAGCCCCGGAGGTTTAAAATATTTTTAGAAGCCTTGGAGCACCAACTTTTGAAGGACCGGAAGAAGAATATAAAGAAGCGACCTTTGCAGGGTGGAAATTGTCAATCTCCTGCTCTTAACACTATCTCAAATCAGTCAAATACCCGTGCAGTTAAAATGATTCTTGTTGAGAGTCAAAATATCATAAAACTTGGACCTTCAAAACCACCATTGAAGCGCAATGTGAACATGGGTGTTAACCGCAGTAATGCTAAGGGAGATTCAAATAACTCAAAACCTACAAGGCAGCGGAAGAAATCTGCTACGATCACAGCAGCTGCATATAGAAAATGGGAGAAGGCTGCAATTGCTGGAGTCTCTTTAGTTGCAGATGCTGCTGAGCATTTGGAGCGAGCTGCCACTGTTAAAGAGGCTGAACATGACCAGGAGAATCCCGGTAGCTATCACAGTGGAGGGAAAAAATGTTCTGATCCTGCCGATCATGTCCTTCCCTCTTTACCCACATTTCCACAAAATCACTATGTTGATAACAATGTACAGAATACTGTGAAACTTAAGCTCCAATTATTCCCAATTGATGAACCCACTCGAAGAGTCTTGGAAATGGAGAAGCATAATCCATTCTTGGAGCTTACTCTTAGTACACGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGCAAATGGGGCAATTCAAGCATAGCAGTTGGAGAGTTGATGCTTTTTCCTTATGGTGTTCAAAAGGAAAACTTGAATATTTATCAAAGATGGAACCAGGAATCTACTCTTAGTGCCGCAGATATATATGCAGTGATAGGAAGTCCGCCTATATTCCGTTTAAGGTATGGTTGGTTCTCTAATGCTGAGCACGGGACATTAAATATGCAAACCCCTGTAGCATCCAGTTACATAGTTAGACAGTCCAAAAACGGTGATGATAATATGATGGATCAGATTGTGAATTTGACATCGCTTCCTATGCCATCAACTAACAATTACTCTACGGAGTGCTCTGTAAATTGTGAAACATCCATGAACAAAAGCAACGCTCTTACCTCTACTTCAACTTATTTGCCTAACACTATAGACGGAAGTATATACCAGAATACAAGTACTGAGGAACCTTGTGGACCTACAGCCCATATATCATTGCATGGAAAAGATGTGACTGATGGAGCTGTATCTAGACAGTTGGAAGACATGGAGGAGTTGAAATCAAACAGTGGATCTGGCCTGTCGGCTGGTGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGATCTACTATCAGGAGTCTCCCAGGATCTCAATGATAACTGCATTGATCCTCTAATTGCTGAGAATTGTCGTAGTGTTCATCAAATTCCTTTTAGTAGTGATTCTTTTGATGCTGCTATTGCTGCTCACATATCTAAACACCAAGACAAGATGGGACAATCAACTATGGTATCTCATATGTCATCCATCTGGGATGCTGAAGAAACTTGTGATGCTTTCTCATTTAAAAAACATCCTATTCGTCATGAAGATGGTCCTTGTTTTTCTCTCACTGCTGCTTTAGATTCTGATAAAAAGGTCCTTGAAAGAAGCTTTGACAATTTGGATAAGCTTTCACCTGAAAAAGAGAGCCTTGTGGATGATATTGCTCAAACAGACCATATGCCTATGGACAGTTGTGAGGCCGGTGCAGATATCAAGTATCATTTAGCAAAGGATTTTACTGGGATAGCAGATATGTATTGGCCTGATTCTTTGGGACCGCTTGATTTGGAAATACCATCTACTAAGTACAACAGTGATGATCCAATTTTAAGTGATAGTCTTAGTGGACTGAATCGCTTGATAGCCAGCAGCCTGGATGCATTCCAGAATTGCTCCTTTTTTGGGATTGACAAGAAGGAAACACCATCGACAGTTGAGGCTCAAGAAACTGCCACTCTCTCAGATTTTAAAATTGGAAGTGGTATTTGA 2403 0.4128 MQADAEILIDFNTQLHSETVVSVQNGDPGVSTSLANDVVMPQQPAPKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPELCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFLEALEHQLLKDRKKNIKKRPLQGGNCQSPALNTISNQSNTRAVKMILVESQNIIKLGPSKPPLKRNVNMGVNRSNAKGDSNNSKPTRQRKKSATITAAAYRKWEKAAIAGVSLVADAAEHLERAATVKEAEHDQENPGSYHSGGKKCSDPADHVLPSLPTFPQNHYVDNNVQNTVKLKLQLFPIDEPTRRVLEMEKHNPFLELTLSTRKKISSILEHLNRKWGNSSIAVGELMLFPYGVQKENLNIYQRWNQESTLSAADIYAVIGSPPIFRLRYGWFSNAEHGTLNMQTPVASSYIVRQSKNGDDNMMDQIVNLTSLPMPSTNNYSTECSVNCETSMNKSNALTSTSTYLPNTIDGSIYQNTSTEEPCGPTAHISLHGKDVTDGAVSRQLEDMEELKSNSGSGLSAGEWADSLTNISVGDLLSGVSQDLNDNCIDPLIAENCRSVHQIPFSSDSFDAAIAAHISKHQDKMGQSTMVSHMSSIWDAEETCDAFSFKKHPIRHEDGPCFSLTAALDSDKKVLERSFDNLDKLSPEKESLVDDIAQTDHMPMDSCEAGADIKYHLAKDFTGIADMYWPDSLGPLDLEIPSTKYNSDDPILSDSLSGLNRLIASSLDAFQNCSFFGIDKKETPSTVEAQETATLSDFKIGSGI 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03406 800 FunFam TSL-kinase interacting protein 1 56 117 - -
Vivi1g03406 800 ProSiteProfiles Myb-like domain profile. 48 98 IPR001005 -
Vivi1g03406 800 MobiDBLite consensus disorder prediction 208 243 - -
Vivi1g03406 800 Gene3D - 9 105 - -
Vivi1g03406 800 ProSiteProfiles SANT domain profile. 56 102 IPR017884 -
Vivi1g03406 800 MobiDBLite consensus disorder prediction 276 299 - -
Vivi1g03406 800 Pfam Myb-like DNA-binding domain 55 97 IPR001005 -
Vivi1g03406 800 SUPERFAMILY Homeodomain-like 48 102 IPR009057 -
Vivi1g03406 800 FunFam TSL-kinase interacting protein 1 16 105 - -
Vivi1g03406 800 PANTHER CRAMPED PROTEIN 37 773 - -
Vivi1g03406 800 CDD SANT 55 98 IPR001005 -
Vivi1g03406 800 SMART sant 52 100 IPR001005 -
Vivi1g03406 800 MobiDBLite consensus disorder prediction 218 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03406 Vivi-Chr1 73392318 73399176 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g03406 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03406 - - psat:127074900 1548.49